|
Status |
Public on Nov 25, 2015 |
Title |
Mfa198-2 |
Sample type |
SRA |
|
|
Source name |
brain tissue of aborted newborn MECP2 transgenic monkey
|
Organism |
Macaca fascicularis |
Characteristics |
tissue: cortical region age: P0 genotype: MECP2 transgenic
|
Extracted molecule |
total RNA |
Extraction protocol |
Total RNA was extracted from brain tissues of wild-type or MECP2 transgenic monkey by Trizol reagent (Invitrogen) separately. RNA library using standard Ion proton RNA-Seq Kit v2.0 protocol
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Ion Torrent Proton |
|
|
Data processing |
Reads filtering under criteria removing reads with 20% of the base quality lower than 13 Mapsplice v2.1.6 mapping to reference genome Counts counting Genome_build: mfa5.0 Supplementary_files_format_and_content: TXT file contain counts for each sample
|
|
|
Submission date |
May 27, 2014 |
Last update date |
May 15, 2019 |
Contact name |
Zilong Qiu |
E-mail(s) |
zqiu@ion.ac.cn
|
Organization name |
Chinese Academic of Science
|
Street address |
No.320, Rd. Yueyang
|
City |
Shanghai |
ZIP/Postal code |
200435 |
Country |
China |
|
|
Platform ID |
GPL18726 |
Series (1) |
GSE57974 |
Brain-specific transcriptome analysis in MECP2 transgenic monkeys |
|
Relations |
BioSample |
SAMN02799805 |
SRA |
SRX553404 |