|
| Status |
Public on Nov 25, 2015 |
| Title |
Mfa198-3 |
| Sample type |
SRA |
| |
|
| Source name |
brain tissue of aborted newborn MECP2 transgenic monkey
|
| Organism |
Macaca fascicularis |
| Characteristics |
tissue: cortical region
age: P0
genotype: MECP2 transgenic
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was extracted from brain tissues of wild-type or MECP2 transgenic monkey by Trizol reagent (Invitrogen) separately.
RNA library using standard Ion proton RNA-Seq Kit v2.0 protocol
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Ion Torrent Proton |
| |
|
| Data processing |
Reads filtering under criteria removing reads with 20% of the base quality lower than 13
Mapsplice v2.1.6 mapping to reference genome
Counts counting
Genome_build: mfa5.0
Supplementary_files_format_and_content: TXT file contain counts for each sample
|
| |
|
| Submission date |
May 27, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
Zilong Qiu |
| E-mail(s) |
zqiu@ion.ac.cn
|
| Organization name |
Chinese Academic of Science
|
| Street address |
No.320, Rd. Yueyang
|
| City |
Shanghai |
| ZIP/Postal code |
200435 |
| Country |
China |
| |
|
| Platform ID |
GPL18726 |
| Series (1) |
| GSE57974 |
Brain-specific transcriptome analysis in MECP2 transgenic monkeys |
|
| Relations |
| BioSample |
SAMN02799808 |
| SRA |
SRX553405 |
