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Sample GSM143058 Query DataSets for GSM143058
Status Public on Nov 05, 2007
Title Vero cell infected by infectious bursal disease virus
Sample type SAGE
Anchor NlaIII
Tag Count 22224
Tag Length 17
 
Source name vero cell,infectious bursal disease virus
Organism Chlorocebus aethiops
Characteristics Cercopithecus aethiops kidney cell were incubated in MEM media containing 10%FBS,at 5%CO2,37℃.
IBDV NB strain
Extracted molecule polyA RNA
Extraction protocol as the protocol of commercial kit producted by invitrogen company,I-SAGE™ Long Kit,Catalog no. T5000-03
 
Description as the commercial kit producted by invitrogen company,I-SAGE™ Long Kit,Catalog no. T5000-03
 
Submission date Oct 30, 2006
Last update date Nov 19, 2008
Contact name Jiyong Zhou
E-mail(s) jyzhou@zju.edu.cn
Phone 86-571-86971698
Fax 86-571-86971698
Organization name Zhejiang University
Department Colege of Animal Science
Lab Lab of Animal Virology and Immunology
Street address 268 Kaixuan road
City Hangzhou
State/province Zhejiang Province
ZIP/Postal code 310029
Country China
 
Platform ID GPL4510
Series (1)
GSE6243 Large scale gene expression of Vero cell correlated to infection of infectious bursal disease virus

Data table header descriptions
TAG Vero cells infected by IBDV
COUNT raw count
TPM tags per million

Data table
TAG COUNT TPM
aaaaaaaaaaaaaaaaa 19 854.93
aaaaaaaaaaaaaaaag 2 89.99
aaaaaaaaaaaaaaatt 1 45.00
aaaaaaaaaaacaaaaa 1 45.00
aaaaaaaagacttttat 1 45.00
aaaaaaactgtgtttct 1 45.00
aaaaaaatttctttctc 1 45.00
aaaaaacccaactacag 1 45.00
aaaaaattatcaacatt 1 45.00
aaaaacaaaaaaaatac 1 45.00
aaaaactttatcaaact 1 45.00
aaaaactttatcaaagt 1 45.00
aaaaagataatggagac 1 45.00
aaaaagatatctatgta 1 45.00
aaaaagatgtctatgta 8 359.97
aaaaagatgtttatgta 1 45.00
aaaaagcagatgacttg 2 89.99
aaaaagcagccttccct 1 45.00
aaaaataaagcaagcac 7 314.97
aaaaataaagcaagtac 1 45.00

Total number of rows: 9186

Table truncated, full table size 234 Kbytes.




Supplementary data files not provided

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