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Sample GSM146781 Query DataSets for GSM146781
Status Public on Nov 23, 2006
Title Stage 1, PT#3, Tumor (HG-U133A)
Sample type RNA
Source name Human Renal Epithelium
Organism Homo sapiens
Characteristics Tumor, PT#3, STG1
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions
Label biotin
Label protocol Biotinylated cRNA were prepared accordiing to the standard Affymetrix protocol from 8.4 ug of total RNA
Hybridization protocol Follow fragmentation, 10ug of cRNA were hybridized for 16 hrs at 45C on HG U133A and HG U133B Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
Description Tumor HRE
Data processing The data were analyzed with GCOS 1.2 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500
Submission date Nov 22, 2006
Last update date Nov 22, 2006
Contact name John A Copland
Organization name Mayo Clinic College of Medicine
Department Biochemistry & Molecular Biology
Street address 4500 San Pablo Road
City Jacksonville
State/province FL
ZIP/Postal code 32224
Country USA
Platform ID GPL96
Series (1)
GSE6344 Gene expression in Stage 1,2 Normal and Tumor kidney cancer

Data table header descriptions
VALUE MAS5-calculated Signal intensity

Data table
AFFX-BioB-5_at 351.1 P 0.028457
AFFX-BioB-M_at 731.1 P 0.000127
AFFX-BioB-3_at 390 P 0.002556
AFFX-BioC-5_at 1173.6 P 8.10E-05
AFFX-BioC-3_at 1045.1 P 0.000169
AFFX-BioDn-5_at 908.2 P 6.00E-05
AFFX-BioDn-3_at 6981.8 P 7.00E-05
AFFX-CreX-5_at 11378.8 P 4.40E-05
AFFX-CreX-3_at 18549.1 P 4.40E-05
AFFX-DapX-5_at 29.9 A 0.227636
AFFX-DapX-M_at 92.4 P 0.046482
AFFX-DapX-3_at 11.2 A 0.699394
AFFX-LysX-5_at 2750.1 P 4.40E-05
AFFX-LysX-M_at 5324.6 P 4.40E-05
AFFX-LysX-3_at 7153.5 P 4.40E-05
AFFX-PheX-5_at 8299.6 P 4.40E-05
AFFX-PheX-M_at 12447.6 P 4.40E-05
AFFX-PheX-3_at 13628.6 P 4.40E-05
AFFX-ThrX-5_at 215.9 P 0.001248
AFFX-ThrX-M_at 368 P 0.001102

Total number of rows: 22283

Table truncated, full table size 594 Kbytes.

Supplementary file Size Download File type/resource
GSM146781.CEL.gz 3.3 Mb (ftp)(http) CEL

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