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Sample GSM146782 Query DataSets for GSM146782
Status Public on Nov 23, 2006
Title Stage 1, PT#4, Normal (HG-U133A)
Sample type RNA
Source name Human Renal Epithelium
Organism Homo sapiens
Characteristics Normal, PT#4, STG1
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions
Label biotin
Label protocol Biotinylated cRNA were prepared accordiing to the standard Affymetrix protocol from 8.4 ug of total RNA
Hybridization protocol Follow fragmentation, 10ug of cRNA were hybridized for 16 hrs at 45C on HG U133A and HG U133B Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
Description Normal HRE
Data processing The data were analyzed with GCOS 1.2 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500
Submission date Nov 22, 2006
Last update date Nov 22, 2006
Contact name John A Copland
Organization name Mayo Clinic College of Medicine
Department Biochemistry & Molecular Biology
Street address 4500 San Pablo Road
City Jacksonville
State/province FL
ZIP/Postal code 32224
Country USA
Platform ID GPL96
Series (1)
GSE6344 Gene expression in Stage 1,2 Normal and Tumor kidney cancer

Data table header descriptions
VALUE MAS5-calculated Signal intensity

Data table
AFFX-BioB-5_at 632.6 P 0.000754
AFFX-BioB-M_at 1419.1 P 0.000127
AFFX-BioB-3_at 820.8 P 0.000169
AFFX-BioC-5_at 1843.3 P 0.000225
AFFX-BioC-3_at 1816.5 P 6.00E-05
AFFX-BioDn-5_at 1949.5 P 4.40E-05
AFFX-BioDn-3_at 10992.6 P 6.00E-05
AFFX-CreX-5_at 20107.2 P 4.40E-05
AFFX-CreX-3_at 26357.6 P 4.40E-05
AFFX-DapX-5_at 75.7 P 0.00762
AFFX-DapX-M_at 147 P 0.012547
AFFX-DapX-3_at 142.8 M 0.058444
AFFX-LysX-5_at 6743.2 P 4.40E-05
AFFX-LysX-M_at 12953.3 P 4.40E-05
AFFX-LysX-3_at 16464.7 P 4.40E-05
AFFX-PheX-5_at 19511.7 P 4.40E-05
AFFX-PheX-M_at 26364.9 P 4.40E-05
AFFX-PheX-3_at 25664.8 P 4.40E-05
AFFX-ThrX-5_at 494.1 P 0.000169
AFFX-ThrX-M_at 821.5 P 7.00E-05

Total number of rows: 22283

Table truncated, full table size 595 Kbytes.

Supplementary file Size Download File type/resource
GSM146782.CEL.gz 3.3 Mb (ftp)(http) CEL

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