GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM146784 Query DataSets for GSM146784
Status Public on Nov 23, 2006
Title Stage 1, PT#5,Normal (HG-U133A)
Sample type RNA
Source name Human Renal Epithelium
Organism Homo sapiens
Characteristics Normal, PT#5, STG1
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions
Label biotin
Label protocol Biotinylated cRNA were prepared accordiing to the standard Affymetrix protocol from 8.4 ug of total RNA
Hybridization protocol Follow fragmentation, 10ug of cRNA were hybridized for 16 hrs at 45C on HG U133A and HG U133B Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
Description Normal HRE
Data processing The data were analyzed with GCOS 1.2 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500
Submission date Nov 22, 2006
Last update date Jan 09, 2007
Contact name John A Copland
Organization name Mayo Clinic College of Medicine
Department Biochemistry & Molecular Biology
Street address 4500 San Pablo Road
City Jacksonville
State/province FL
ZIP/Postal code 32224
Country USA
Platform ID GPL96
Series (1)
GSE6344 Gene expression in Stage 1,2 Normal and Tumor kidney cancer

Data table header descriptions
VALUE MAS5-calculated Signal intensity

Data table
AFFX-BioB-5_at 741.9 P 0.001248
AFFX-BioB-M_at 1701.5 P 0.000581
AFFX-BioB-3_at 912.9 P 0.000662
AFFX-BioC-5_at 2108.1 P 0.000169
AFFX-BioC-3_at 2068.2 P 9.50E-05
AFFX-BioDn-5_at 2020.3 P 8.10E-05
AFFX-BioDn-3_at 11296.7 P 4.40E-05
AFFX-CreX-5_at 19067.5 P 4.40E-05
AFFX-CreX-3_at 27918.5 P 4.40E-05
AFFX-DapX-5_at 91.2 A 0.185131
AFFX-DapX-M_at 44.6 A 0.52976
AFFX-DapX-3_at 16.1 A 0.904333
AFFX-LysX-5_at 1561.1 P 4.40E-05
AFFX-LysX-M_at 3419.2 P 4.40E-05
AFFX-LysX-3_at 5306.8 P 6.00E-05
AFFX-PheX-5_at 3900.8 P 4.40E-05
AFFX-PheX-M_at 8174.7 P 4.40E-05
AFFX-PheX-3_at 12535.7 P 4.40E-05
AFFX-ThrX-5_at 202.8 M 0.054213
AFFX-ThrX-M_at 244.9 P 0.028457

Total number of rows: 22283

Table truncated, full table size 595 Kbytes.

Supplementary file Size Download File type/resource
GSM146784.CEL.gz 3.2 Mb (ftp)(http) CEL

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap