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Sample GSM146790 Query DataSets for GSM146790
Status Public on Nov 23, 2006
Title Stage 2, PT#9, Normal (HG-U133A)
Sample type RNA
Source name Human Renal Epithelium
Organism Homo sapiens
Characteristics Normal, PT#9, STG2
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions
Label biotin
Label protocol Biotinylated cRNA were prepared accordiing to the standard Affymetrix protocol from 8.4 ug of total RNA
Hybridization protocol Follow fragmentation, 10ug of cRNA were hybridized for 16 hrs at 45C on HG U133A and HG U133B Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
Description Normal HRE
Data processing The data were analyzed with GCOS 1.2 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500
Submission date Nov 22, 2006
Last update date Nov 22, 2006
Contact name John A Copland
Organization name Mayo Clinic College of Medicine
Department Biochemistry & Molecular Biology
Street address 4500 San Pablo Road
City Jacksonville
State/province FL
ZIP/Postal code 32224
Country USA
Platform ID GPL96
Series (1)
GSE6344 Gene expression in Stage 1,2 Normal and Tumor kidney cancer

Data table header descriptions
VALUE MAS5-calculated Signal intensity

Data table
AFFX-BioB-5_at 472.4 P 0.002867
AFFX-BioB-M_at 667.9 P 0.00034
AFFX-BioB-3_at 380.3 P 0.006871
AFFX-BioC-5_at 1214 P 0.000127
AFFX-BioC-3_at 1116.4 P 0.000147
AFFX-BioDn-5_at 831.8 P 9.50E-05
AFFX-BioDn-3_at 6746.7 P 6.00E-05
AFFX-CreX-5_at 10037.7 P 4.40E-05
AFFX-CreX-3_at 15740.8 P 4.40E-05
AFFX-DapX-5_at 52 A 0.185131
AFFX-DapX-M_at 54.2 A 0.340661
AFFX-DapX-3_at 66.5 A 0.39692
AFFX-LysX-5_at 1924 P 4.40E-05
AFFX-LysX-M_at 3969.7 P 4.40E-05
AFFX-LysX-3_at 6826.2 P 4.40E-05
AFFX-PheX-5_at 7043.1 P 4.40E-05
AFFX-PheX-M_at 10301 P 4.40E-05
AFFX-PheX-3_at 10388.2 P 4.40E-05
AFFX-ThrX-5_at 247.5 P 0.003212
AFFX-ThrX-M_at 345.8 P 0.004998

Total number of rows: 22283

Table truncated, full table size 595 Kbytes.

Supplementary file Size Download File type/resource
GSM146790.CEL.gz 3.4 Mb (ftp)(http) CEL

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