GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM146791 Query DataSets for GSM146791
Status Public on Nov 23, 2006
Title Stage 2, PT#9, Tumor (HG-U133A)
Sample type RNA
Source name Human Renal Epithelium
Organism Homo sapiens
Characteristics Tumor, PT#9, STG2
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions
Label biotin
Label protocol Biotinylated cRNA were prepared accordiing to the standard Affymetrix protocol from 8.4 ug of total RNA
Hybridization protocol Follow fragmentation, 10ug of cRNA were hybridized for 16 hrs at 45C on HG U133A and HG U133B Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
Description Tumor HRE
Data processing The data were analyzed with GCOS 1.2 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500
Submission date Nov 22, 2006
Last update date Nov 22, 2006
Contact name John A Copland
Organization name Mayo Clinic College of Medicine
Department Biochemistry & Molecular Biology
Street address 4500 San Pablo Road
City Jacksonville
State/province FL
ZIP/Postal code 32224
Country USA
Platform ID GPL96
Series (1)
GSE6344 Gene expression in Stage 1,2 Normal and Tumor kidney cancer

Data table header descriptions
VALUE MAS5-calculated Signal intensity

Data table
AFFX-BioB-5_at 305 P 0.004017
AFFX-BioB-M_at 770.9 P 5.20E-05
AFFX-BioB-3_at 417.2 P 0.000446
AFFX-BioC-5_at 1370.2 P 9.50E-05
AFFX-BioC-3_at 928.7 P 0.000147
AFFX-BioDn-5_at 911.6 P 6.00E-05
AFFX-BioDn-3_at 5801.4 P 6.00E-05
AFFX-CreX-5_at 10252 P 4.40E-05
AFFX-CreX-3_at 18321.5 P 4.40E-05
AFFX-DapX-5_at 35.5 A 0.185131
AFFX-DapX-M_at 55 A 0.262827
AFFX-DapX-3_at 93.3 A 0.067678
AFFX-LysX-5_at 3157 P 4.40E-05
AFFX-LysX-M_at 6712.3 P 4.40E-05
AFFX-LysX-3_at 8998.3 P 4.40E-05
AFFX-PheX-5_at 7902.5 P 4.40E-05
AFFX-PheX-M_at 12376.2 P 4.40E-05
AFFX-PheX-3_at 17628.6 P 4.40E-05
AFFX-ThrX-5_at 195.1 P 0.000509
AFFX-ThrX-M_at 406.8 P 0.000225

Total number of rows: 22283

Table truncated, full table size 594 Kbytes.

Supplementary file Size Download File type/resource
GSM146791.CEL.gz 3.3 Mb (ftp)(http) CEL

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap