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Sample GSM146796 Query DataSets for GSM146796
Status Public on Nov 23, 2006
Title Stage 2, PT#12, Normal (HG-U133A)
Sample type RNA
 
Source name Human Renal Epithelium
Organism Homo sapiens
Characteristics Normal, PT#12, STG2
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions
Label biotin
Label protocol Biotinylated cRNA were prepared accordiing to the standard Affymetrix protocol from 8.4 ug of total RNA
 
Hybridization protocol Follow fragmentation, 10ug of cRNA were hybridized for 16 hrs at 45C on HG U133A and HG U133B Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
Description Normal HRE
Data processing The data were analyzed with GCOS 1.2 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500
 
Submission date Nov 22, 2006
Last update date Nov 22, 2006
Contact name John A Copland
E-mail(s) Copland.John@mayo.edu
Organization name Mayo Clinic College of Medicine
Department Biochemistry & Molecular Biology
Street address 4500 San Pablo Road
City Jacksonville
State/province FL
ZIP/Postal code 32224
Country USA
 
Platform ID GPL96
Series (1)
GSE6344 Gene expression in Stage 1,2 Normal and Tumor kidney cancer

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 673.6 P 0.002556
AFFX-BioB-M_at 1331.1 P 0.000225
AFFX-BioB-3_at 590.7 P 0.000509
AFFX-BioC-5_at 1673.7 P 0.000147
AFFX-BioC-3_at 1544.4 P 8.10E-05
AFFX-BioDn-5_at 1328.2 P 6.00E-05
AFFX-BioDn-3_at 9987.3 P 5.20E-05
AFFX-CreX-5_at 16345.4 P 4.40E-05
AFFX-CreX-3_at 22926.2 P 4.40E-05
AFFX-DapX-5_at 73.5 A 0.067678
AFFX-DapX-M_at 117.6 A 0.083592
AFFX-DapX-3_at 52.8 A 0.368438
AFFX-LysX-5_at 3088.8 P 4.40E-05
AFFX-LysX-M_at 5946.9 P 4.40E-05
AFFX-LysX-3_at 10194.5 P 4.40E-05
AFFX-PheX-5_at 9484.4 P 4.40E-05
AFFX-PheX-M_at 14526.1 P 4.40E-05
AFFX-PheX-3_at 15547.2 P 4.40E-05
AFFX-ThrX-5_at 304.3 P 0.001248
AFFX-ThrX-M_at 410.4 P 0.001102

Total number of rows: 22283

Table truncated, full table size 595 Kbytes.




Supplementary file Size Download File type/resource
GSM146796.CEL.gz 3.4 Mb (ftp)(http) CEL

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