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Sample GSM146801 Query DataSets for GSM146801
Status Public on Nov 23, 2006
Title Stage 1, PT#3, Tumor (HG-U133B)
Sample type RNA
Source name Human Renal Epithelium
Organism Homo sapiens
Characteristics Tumor, PT#3, STG1
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions
Label biotin
Label protocol Biotinylated cRNA were prepared accordiing to the standard Affymetrix protocol from 8.4 ug of total RNA
Hybridization protocol Follow fragmentation, 10ug of cRNA were hybridized for 16 hrs at 45C on HG U133A and HG U133B Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
Description Tumor HRE
Data processing The data were analyzed with GCOS 1.2 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500
Submission date Nov 22, 2006
Last update date Nov 22, 2006
Contact name John A Copland
Organization name Mayo Clinic College of Medicine
Department Biochemistry & Molecular Biology
Street address 4500 San Pablo Road
City Jacksonville
State/province FL
ZIP/Postal code 32224
Country USA
Platform ID GPL97
Series (1)
GSE6344 Gene expression in Stage 1,2 Normal and Tumor kidney cancer

Data table header descriptions
VALUE MAS5-calculated Signal intensity

Data table
AFFX-BioB-5_at 844.9 P 0.001796
AFFX-BioB-M_at 1677.3 P 6.00E-05
AFFX-BioB-3_at 951.9 P 0.000446
AFFX-BioC-5_at 2431.6 P 9.50E-05
AFFX-BioC-3_at 2429.3 P 5.20E-05
AFFX-BioDn-5_at 2154.1 P 6.00E-05
AFFX-BioDn-3_at 15618.7 P 7.00E-05
AFFX-CreX-5_at 28306.6 P 4.40E-05
AFFX-CreX-3_at 39459.4 P 4.40E-05
AFFX-DapX-5_at 74.1 A 0.165861
AFFX-DapX-M_at 180.3 P 0.030976
AFFX-DapX-3_at 14.6 A 0.921998
AFFX-LysX-5_at 6695.9 P 4.40E-05
AFFX-LysX-M_at 12001.9 P 4.40E-05
AFFX-LysX-3_at 18254.4 P 4.40E-05
AFFX-PheX-5_at 20788 P 4.40E-05
AFFX-PheX-M_at 26422.7 P 4.40E-05
AFFX-PheX-3_at 30032 P 4.40E-05
AFFX-ThrX-5_at 398.5 P 0.00141
AFFX-ThrX-M_at 722.4 P 0.000446

Total number of rows: 22645

Table truncated, full table size 593 Kbytes.

Supplementary file Size Download File type/resource
GSM146801.CEL.gz 3.3 Mb (ftp)(http) CEL

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