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Sample GSM146802 Query DataSets for GSM146802
Status Public on Nov 23, 2006
Title Stage 1, PT#4, Normal (HG-U133B)
Sample type RNA
Source name Human Renal Epithelium
Organism Homo sapiens
Characteristics Normal, PT#4, STG1
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions
Label biotin
Label protocol Biotinylated cRNA were prepared accordiing to the standard Affymetrix protocol from 8.4 ug of total RNA
Hybridization protocol Follow fragmentation, 10ug of cRNA were hybridized for 16 hrs at 45C on HG U133A and HG U133B Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
Description Normal HRE
Data processing The data were analyzed with GCOS 1.2 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500
Submission date Nov 22, 2006
Last update date Nov 22, 2006
Contact name John A Copland
Organization name Mayo Clinic College of Medicine
Department Biochemistry & Molecular Biology
Street address 4500 San Pablo Road
City Jacksonville
State/province FL
ZIP/Postal code 32224
Country USA
Platform ID GPL97
Series (1)
GSE6344 Gene expression in Stage 1,2 Normal and Tumor kidney cancer

Data table header descriptions
VALUE MAS5-calculated Signal intensity

Data table
AFFX-BioB-5_at 1403.9 P 0.002023
AFFX-BioB-M_at 2971.2 P 0.00011
AFFX-BioB-3_at 1537.6 P 0.00039
AFFX-BioC-5_at 3451.2 P 0.00011
AFFX-BioC-3_at 3399.2 P 6.00E-05
AFFX-BioDn-5_at 3043.6 P 7.00E-05
AFFX-BioDn-3_at 20788.6 P 5.20E-05
AFFX-CreX-5_at 38568.2 P 4.40E-05
AFFX-CreX-3_at 56958.8 P 4.40E-05
AFFX-DapX-5_at 195.3 P 0.020022
AFFX-DapX-M_at 302.6 P 0.028457
AFFX-DapX-3_at 247.8 A 0.300606
AFFX-LysX-5_at 12166.6 P 4.40E-05
AFFX-LysX-M_at 26178.7 P 4.40E-05
AFFX-LysX-3_at 32795.5 P 4.40E-05
AFFX-PheX-5_at 38368.7 P 4.40E-05
AFFX-PheX-M_at 50305.1 P 4.40E-05
AFFX-PheX-3_at 52385.9 P 4.40E-05
AFFX-ThrX-5_at 871.6 P 4.40E-05
AFFX-ThrX-M_at 1592.7 P 6.00E-05

Total number of rows: 22645

Table truncated, full table size 593 Kbytes.

Supplementary file Size Download File type/resource
GSM146802.CEL.gz 3.2 Mb (ftp)(http) CEL

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