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Sample GSM146805 Query DataSets for GSM146805
Status Public on Nov 23, 2006
Title Stage 1, PT#5, Tumor (HG-U133B)
Sample type RNA
Source name Human Renal Epithelium
Organism Homo sapiens
Characteristics Tumor, PT#5, STG1
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions
Label biotin
Label protocol Biotinylated cRNA were prepared accordiing to the standard Affymetrix protocol from 8.4 ug of total RNA
Hybridization protocol Follow fragmentation, 10ug of cRNA were hybridized for 16 hrs at 45C on HG U133A and HG U133B Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
Description Tumor HRE
Data processing The data were analyzed with GCOS 1.2 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500
Submission date Nov 22, 2006
Last update date Nov 22, 2006
Contact name John A Copland
Organization name Mayo Clinic College of Medicine
Department Biochemistry & Molecular Biology
Street address 4500 San Pablo Road
City Jacksonville
State/province FL
ZIP/Postal code 32224
Country USA
Platform ID GPL97
Series (1)
GSE6344 Gene expression in Stage 1,2 Normal and Tumor kidney cancer

Data table header descriptions
VALUE MAS5-calculated Signal intensity

Data table
AFFX-BioB-5_at 1251.9 P 0.000581
AFFX-BioB-M_at 2929.3 P 0.00011
AFFX-BioB-3_at 1215.3 P 0.00011
AFFX-BioC-5_at 3440.7 P 6.00E-05
AFFX-BioC-3_at 3267.6 P 4.40E-05
AFFX-BioDn-5_at 3811.8 P 4.40E-05
AFFX-BioDn-3_at 18401.7 P 7.00E-05
AFFX-CreX-5_at 32858.5 P 4.40E-05
AFFX-CreX-3_at 48825.8 P 4.40E-05
AFFX-DapX-5_at 102.4 A 0.067678
AFFX-DapX-M_at 200.8 P 0.036569
AFFX-DapX-3_at 194.6 A 0.116113
AFFX-LysX-5_at 9856.1 P 4.40E-05
AFFX-LysX-M_at 21483.5 P 4.40E-05
AFFX-LysX-3_at 27273.7 P 4.40E-05
AFFX-PheX-5_at 29105.3 P 4.40E-05
AFFX-PheX-M_at 39249 P 4.40E-05
AFFX-PheX-3_at 42984.3 P 4.40E-05
AFFX-ThrX-5_at 603.3 P 0.000446
AFFX-ThrX-M_at 1373.7 P 6.00E-05

Total number of rows: 22645

Table truncated, full table size 593 Kbytes.

Supplementary file Size Download File type/resource
GSM146805.CEL.gz 3.2 Mb (ftp)(http) CEL

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