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Sample GSM146809 Query DataSets for GSM146809
Status Public on Nov 23, 2006
Title Stage 2, PT#8, Normal (HG-U133B)
Sample type RNA
Source name Human Renal Epithelium
Organism Homo sapiens
Characteristics Normal, PT#8, STG2
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions
Label biotin
Label protocol Biotinylated cRNA were prepared accordiing to the standard Affymetrix protocol from 8.4 ug of total RNA
Hybridization protocol Follow fragmentation, 10ug of cRNA were hybridized for 16 hrs at 45C on HG U133A and HG U133B Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
Description Normal HRE
Data processing The data were analyzed with GCOS 1.2 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500
Submission date Nov 22, 2006
Last update date Nov 22, 2006
Contact name John A Copland
Organization name Mayo Clinic College of Medicine
Department Biochemistry & Molecular Biology
Street address 4500 San Pablo Road
City Jacksonville
State/province FL
ZIP/Postal code 32224
Country USA
Platform ID GPL97
Series (1)
GSE6344 Gene expression in Stage 1,2 Normal and Tumor kidney cancer

Data table header descriptions
VALUE MAS5-calculated Signal intensity

Data table
AFFX-BioB-5_at 1404.7 P 0.002556
AFFX-BioB-M_at 3235.7 P 0.000258
AFFX-BioB-3_at 1335.6 P 0.000754
AFFX-BioC-5_at 3136.4 P 0.000127
AFFX-BioC-3_at 3592.6 P 7.00E-05
AFFX-BioDn-5_at 3139.9 P 5.20E-05
AFFX-BioDn-3_at 15720.8 P 4.40E-05
AFFX-CreX-5_at 33058.6 P 4.40E-05
AFFX-CreX-3_at 48763.3 P 4.40E-05
AFFX-DapX-5_at 138.2 P 0.046482
AFFX-DapX-M_at 233 A 0.165861
AFFX-DapX-3_at 194.8 A 0.425962
AFFX-LysX-5_at 4357.6 P 4.40E-05
AFFX-LysX-M_at 10875.7 P 4.40E-05
AFFX-LysX-3_at 22579.6 P 4.40E-05
AFFX-PheX-5_at 11446.7 P 4.40E-05
AFFX-PheX-M_at 21884.3 P 4.40E-05
AFFX-PheX-3_at 30024.2 P 4.40E-05
AFFX-ThrX-5_at 413.8 P 0.039661
AFFX-ThrX-M_at 767.9 P 0.001796

Total number of rows: 22645

Table truncated, full table size 593 Kbytes.

Supplementary file Size Download File type/resource
GSM146809.CEL.gz 3.3 Mb (ftp)(http) CEL

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