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Sample GSM146811 Query DataSets for GSM146811
Status Public on Nov 23, 2006
Title Stage 2, PT#9, Tumor (HG-U133B)
Sample type RNA
Source name Human Renal Epithelium
Organism Homo sapiens
Characteristics Tumor, PT#9, STG2
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions
Label biotin
Label protocol Biotinylated cRNA were prepared accordiing to the standard Affymetrix protocol from 8.4 ug of total RNA
Hybridization protocol Follow fragmentation, 10ug of cRNA were hybridized for 16 hrs at 45C on HG U133A and HG U133B Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
Description Tumor HRE
Data processing The data were analyzed with GCOS 1.2 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500
Submission date Nov 22, 2006
Last update date Nov 22, 2006
Contact name John A Copland
Organization name Mayo Clinic College of Medicine
Department Biochemistry & Molecular Biology
Street address 4500 San Pablo Road
City Jacksonville
State/province FL
ZIP/Postal code 32224
Country USA
Platform ID GPL97
Series (1)
GSE6344 Gene expression in Stage 1,2 Normal and Tumor kidney cancer

Data table header descriptions
VALUE MAS5-calculated Signal intensity

Data table
AFFX-BioB-5_at 1039 P 0.000857
AFFX-BioB-M_at 1665.4 P 6.00E-05
AFFX-BioB-3_at 1014.3 P 0.00034
AFFX-BioC-5_at 2974.2 P 7.00E-05
AFFX-BioC-3_at 2689.1 P 6.00E-05
AFFX-BioDn-5_at 3036.2 P 4.40E-05
AFFX-BioDn-3_at 11027.8 P 4.40E-05
AFFX-CreX-5_at 28946.7 P 4.40E-05
AFFX-CreX-3_at 43096 P 4.40E-05
AFFX-DapX-5_at 68.1 A 0.131361
AFFX-DapX-M_at 236.7 A 0.083592
AFFX-DapX-3_at 223.6 P 0.039661
AFFX-LysX-5_at 8266.2 P 4.40E-05
AFFX-LysX-M_at 18846.2 P 4.40E-05
AFFX-LysX-3_at 25571.2 P 4.40E-05
AFFX-PheX-5_at 22894.2 P 4.40E-05
AFFX-PheX-M_at 35293.8 P 4.40E-05
AFFX-PheX-3_at 41386 P 4.40E-05
AFFX-ThrX-5_at 422 P 0.003595
AFFX-ThrX-M_at 1227.6 P 7.00E-05

Total number of rows: 22645

Table truncated, full table size 592 Kbytes.

Supplementary file Size Download File type/resource
GSM146811.CEL.gz 3.1 Mb (ftp)(http) CEL

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