|
Status |
Public on Feb 11, 2007 |
Title |
DPY-27 IP2 array1 |
Sample type |
genomic |
|
|
Channel 1 |
Source name |
IP performed with DPY-27 antibody
|
Organism |
Caenorhabditis elegans |
Characteristics |
IPs performed with DPY-27 antibody in mixed embryos obtained from N2 hermaphrodites.
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Extract was prepared from formaldehyde fixed N2 embryos by dounce homogenization followed by sonication. (see publication for details)
|
Label |
Cy3
|
Label protocol |
see NimbleGen website
|
|
|
Channel 2 |
Source name |
Input as reference
|
Organism |
Caenorhabditis elegans |
Characteristics |
Input as reference
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Extract was prepared from formaldehyde fixed N2 embryos by dounce homogenization followed by sonication.
|
Label |
Cy5
|
Label protocol |
see NimbleGen website
|
|
|
|
Hybridization protocol |
see NimbleGen website
|
Scan protocol |
see NimbleGen website
|
Description |
see NimbleGen website
|
Data processing |
autosomal spot normalized and median centered log2 ratios (see publication)
|
|
|
Submission date |
Dec 01, 2006 |
Last update date |
Jan 30, 2007 |
Contact name |
Jason D Lieb |
E-mail(s) |
jlieb@bio.unc.edu
|
Phone |
919-843-3228
|
Organization name |
University of North Carolina at Chapel Hill
|
Department |
Biology
|
Lab |
Jason Lieb
|
Street address |
408 Fordham Hall, CB# 3280
|
City |
Chapel Hill |
State/province |
NC |
ZIP/Postal code |
27599-3280 |
Country |
USA |
|
|
Platform ID |
GPL4614 |
Series (2) |
GSE6739 |
ChIP-chip analysis of Dosage Compensation complex members SDC-3 and DPY-27 in C elegans wild type embryos. |
GSE26186 |
Broad chromosomal domains of histone modification patterns in C. elegans |
|