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Sample GSM147968 Query DataSets for GSM147968
Status Public on Feb 11, 2007
Title DPY-27 IP2 array1
Sample type genomic
 
Channel 1
Source name IP performed with DPY-27 antibody
Organism Caenorhabditis elegans
Characteristics IPs performed with DPY-27 antibody in mixed embryos obtained from N2 hermaphrodites.
Extracted molecule genomic DNA
Extraction protocol Extract was prepared from formaldehyde fixed N2 embryos by dounce homogenization followed by sonication. (see publication for details)
Label Cy3
Label protocol see NimbleGen website
 
Channel 2
Source name Input as reference
Organism Caenorhabditis elegans
Characteristics Input as reference
Extracted molecule genomic DNA
Extraction protocol Extract was prepared from formaldehyde fixed N2 embryos by dounce homogenization followed by sonication.
Label Cy5
Label protocol see NimbleGen website
 
 
Hybridization protocol see NimbleGen website
Scan protocol see NimbleGen website
Description see NimbleGen website
Data processing autosomal spot normalized and median centered log2 ratios (see publication)
 
Submission date Dec 01, 2006
Last update date Jan 30, 2007
Contact name Jason D Lieb
E-mail(s) jlieb@bio.unc.edu
Phone 919-843-3228
Organization name University of North Carolina at Chapel Hill
Department Biology
Lab Jason Lieb
Street address 408 Fordham Hall, CB# 3280
City Chapel Hill
State/province NC
ZIP/Postal code 27599-3280
Country USA
 
Platform ID GPL4614
Series (2)
GSE6739 ChIP-chip analysis of Dosage Compensation complex members SDC-3 and DPY-27 in C elegans wild type embryos.
GSE26186 Broad chromosomal domains of histone modification patterns in C. elegans

Data table header descriptions
ID_REF
VALUE median centered log2 ratio sample/reference

Data table
ID_REF VALUE
CHRIP1 -0.15
CHRIP87 0.00
CHRIP173 0.10
CHRIP259 0.01
CHRIP345 0.25
CHRIP431 0.21
CHRIP517 0.17
CHRIP603 0.11
CHRIP689 0.29
CHRIP775 0.15
CHRIP861 0.61
CHRIP947 0.20
CHRIP1033 0.26
CHRIP1119 -0.29
CHRIP1205 0.06
CHRIP1291 -0.17
CHRIP1377 0.04
CHRIP1463 -0.77
CHRIP1549 0.16
CHRIP1635 -0.08

Total number of rows: 577211

Table truncated, full table size 11085 Kbytes.




Supplementary file Size Download File type/resource
GSM147968_532.pair.txt.gz 9.8 Mb (ftp)(http) TXT
GSM147968_635.pair.txt.gz 9.8 Mb (ftp)(http) TXT

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