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GEO accession:
Sample GSM148223
Query DataSets for GSM148223
Status
Public on Feb 07, 2007
Title
Tumor 208
Sample type
genomic
Channel 1
Source name
genomic DNA
Organism
Homo sapiens
Characteristics
Tumor nº : 208
Age (years) : 53
Hormonal Status : POSTMENOPAUSIC
TNMPathol : T2N0M0
Stage: II
Gender : FEMALE
Recurrence Systemic: 1
TREATMENT ADCHEM: : ADCHEM: Anthracycline
DFS(months): 62.4
Erval (Oestrogen Receptor expression) : POSITIVE
PGRval: POSITIVE
Extracted molecule
genomic DNA
Extraction protocol
Standard DNA extraction
Label
cy3
Label protocol
Random primer
Channel 2
Source name
genomic DNA
Organism
Homo sapiens
Characteristics
normal genome
Extracted molecule
genomic DNA
Extraction protocol
Standard DNA extraction
Label
cy5
Label protocol
Random primer
Hybridization protocol
72 hours
Scan protocol
CCD camera
Description
na
Data processing
UCSF Spot (see Jain et al. 2002)
Submission date
Dec 05, 2006
Last update date
Feb 07, 2007
Contact name
Joan Climent
E-mail(s)
jcliment@cc.ucsf.edu
Phone
14158124028
Fax
14155026779
Organization name
UCSF Cancer Center
Department
Cancer Research Institute
Lab
Cancer Genetics
Street address
2340 Sutter St
City
San Francisco
State/province
CA
ZIP/Postal code
94115
Country
USA
Platform ID
GPL3632
Series (1)
GSE6448
Deletion of chromosome 11q predicts response to anthracycline-based chemotherapy in early breast cancer
Data table header descriptions
ID_REF
VALUE
log test/reference
Data table
ID_REF
VALUE
HumArray2H11_N30
-0.231561
HumArray2H11_C9
-0.18079
HumArray2H10_N30
0.007975
HumArray2H10_B18
-0.008399
HumArray2H10_Q30
-0.129389
HumArray2H10_T30
-0.061531
HumArray2H10_B19
-0.049627
HumArray2H10_W30
-0.117473
HumArray2H9_C14
-0.069579
HumArray2H9_F14
0.016388
HumArray2H9_I14
null
HumArray2H9_A23
-0.118155
HumArray2H9_L14
-0.065038
HumArray2H9_O14
-0.005932
HumArray2H11_L8
0.003294
HumArray2H9_B4
-0.071189
HumArray2H10_E19
-0.250235
HumArray2H9_U14
null
HumArray2H9_R14
null
HumArray2H9_C17
-0.071975
Total number of rows:
2445
Table truncated, full table size
60 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM148223.txt.gz
731.2 Kb
(ftp)
(http)
TXT
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