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Sample GSM150191 Query DataSets for GSM150191
Status Public on May 01, 2007
Title PE_D_508
Sample type RNA
 
Source name uterus - Proliferative endometrium from patient with endometriosis
Organism Homo sapiens
Characteristics Proliferative Phase Endometriosis
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA from whole tissue was performed according the manufacturer's instructions.
Label biotin
Label protocol biotinylated cRNA was generated from 5.0 ug total RNA using the Affymetrix labeling protocol.
 
Hybridization protocol cRNA was fragmented and hybridized overnight to Affymetrix U133 Plus 2.0 Genechips.
Scan protocol Chips were scanned using the HR3000 scanner from Affymetrix.
Description Proliferative endometrium from patient with endometriosis
Data processing The data were analyzed using the Gene Chip Operating Software Version 1.2 using the Affymetrix default settings and global scaling as the normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
 
Submission date Dec 14, 2006
Last update date Aug 28, 2018
Contact name Linda Giudice
E-mail(s) giudice@obgyn.ucsf.edu
Phone 415-476-2039
Organization name University of California, San Francisco
Department OBGYN and RS
Lab Giudice Lab
Street address 513 Parnassus Ave. HSE 1619
City San Francisco
State/province CA
ZIP/Postal code 94122
Country USA
 
Platform ID GPL570
Series (1)
GSE6364 Gene Profiling of Endometrium Reveals Progesterone Resistance and Candidate Genetic Loci in Women with Endometriosis
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF Affymetrix Probe Set ID
VALUE GCOS-calculated signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC).
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 2261.8 P 0.000258
AFFX-BioB-M_at 3272 P 0.000044
AFFX-BioB-3_at 1720.5 P 0.000127
AFFX-BioC-5_at 6052.9 P 0.00006
AFFX-BioC-3_at 5328.1 P 0.000052
AFFX-BioDn-5_at 5249.6 P 0.000044
AFFX-BioDn-3_at 28346.1 P 0.000052
AFFX-CreX-5_at 86906.7 P 0.000044
AFFX-CreX-3_at 86829.3 P 0.000044
AFFX-DapX-5_at 33.6 A 0.544587
AFFX-DapX-M_at 142.9 A 0.16584
AFFX-DapX-3_at 15.8 A 0.987453
AFFX-LysX-5_at 132.2 A 0.139462
AFFX-LysX-M_at 46.7 A 0.60308
AFFX-LysX-3_at 48.4 A 0.529762
AFFX-PheX-5_at 45.2 A 0.712257
AFFX-PheX-M_at 18.3 A 0.794288
AFFX-PheX-3_at 48 A 0.712257
AFFX-ThrX-5_at 18.1 A 0.969024
AFFX-ThrX-M_at 30.3 A 0.712274

Total number of rows: 54675

Table truncated, full table size 1455 Kbytes.




Supplementary file Size Download File type/resource
GSM150191.CEL.gz 4.3 Mb (ftp)(http) CEL

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