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Sample GSM150193 Query DataSets for GSM150193
Status Public on May 01, 2007
Title PE_D_594
Sample type RNA
Source name uterus - Proliferative endometrium from patient with endometriosis
Organism Homo sapiens
Characteristics Proliferative Phase Endometriosis
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA from whole tissue was performed according the manufacturer's instructions.
Label biotin
Label protocol biotinylated cRNA was generated from 5.0 ug total RNA using the Affymetrix labeling protocol.
Hybridization protocol cRNA was fragmented and hybridized overnight to Affymetrix U133 Plus 2.0 Genechips.
Scan protocol Chips were scanned using the HR3000 scanner from Affymetrix.
Description Proliferative endometrium from patient with endometriosis
Data processing The data were analyzed using the Gene Chip Operating Software Version 1.2 using the Affymetrix default settings and global scaling as the normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
Submission date Dec 14, 2006
Last update date Aug 28, 2018
Contact name Linda Giudice
Phone 415-476-2039
Organization name University of California, San Francisco
Department OBGYN and RS
Lab Giudice Lab
Street address 513 Parnassus Ave. HSE 1619
City San Francisco
State/province CA
ZIP/Postal code 94122
Country USA
Platform ID GPL570
Series (1)
GSE6364 Gene Profiling of Endometrium Reveals Progesterone Resistance and Candidate Genetic Loci in Women with Endometriosis
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF Affymetrix Probe Set ID
VALUE GCOS-calculated signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC).
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 1375.8 P 0.000581
AFFX-BioB-M_at 2025.2 P 0.000044
AFFX-BioB-3_at 934.8 P 0.00006
AFFX-BioC-5_at 3795.5 P 0.000044
AFFX-BioC-3_at 5336.8 P 0.000044
AFFX-BioDn-5_at 7184.9 P 0.000044
AFFX-BioDn-3_at 19836.3 P 0.000044
AFFX-CreX-5_at 33433 P 0.000052
AFFX-CreX-3_at 38617.5 P 0.000044
AFFX-DapX-5_at 56.7 A 0.139482
AFFX-DapX-M_at 18 A 0.804734
AFFX-DapX-3_at 7.4 A 0.98333
AFFX-LysX-5_at 75.2 A 0.0727
AFFX-LysX-M_at 44.6 A 0.712257
AFFX-LysX-3_at 80.5 A 0.340661
AFFX-PheX-5_at 5.5 A 0.963431
AFFX-PheX-M_at 5.1 A 0.957038
AFFX-PheX-3_at 30.6 A 0.794268
AFFX-ThrX-5_at 40.2 A 0.5
AFFX-ThrX-M_at 12.1 A 0.783476

Total number of rows: 54675

Table truncated, full table size 1454 Kbytes.

Supplementary file Size Download File type/resource
GSM150193.CEL.gz 4.9 Mb (ftp)(http) CEL

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