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Sample GSM150196 Query DataSets for GSM150196
Status Public on May 01, 2007
Title PE_N_562
Sample type RNA
 
Source name uterus - Proliferative endometrium from normal patient
Organism Homo sapiens
Characteristics Proliferative Phase Normal
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA from whole tissue was performed according the manufacturer's instructions.
Label biotin
Label protocol biotinylated cRNA was generated from 5.0 ug total RNA using the Affymetrix labeling protocol.
 
Hybridization protocol cRNA was fragmented and hybridized overnight to Affymetrix U133 Plus 2.0 Genechips.
Scan protocol Chips were scanned using the HR3000 scanner from Affymetrix.
Description Proliferative endometrium from normal patient
Data processing The data were analyzed using the Gene Chip Operating Software Version 1.2 using the Affymetrix default settings and global scaling as the normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
 
Submission date Dec 14, 2006
Last update date Aug 28, 2018
Contact name Linda Giudice
E-mail(s) giudice@obgyn.ucsf.edu
Phone 415-476-2039
Organization name University of California, San Francisco
Department OBGYN and RS
Lab Giudice Lab
Street address 513 Parnassus Ave. HSE 1619
City San Francisco
State/province CA
ZIP/Postal code 94122
Country USA
 
Platform ID GPL570
Series (1)
GSE6364 Gene Profiling of Endometrium Reveals Progesterone Resistance and Candidate Genetic Loci in Women with Endometriosis
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF Affymetrix Probe Set ID
VALUE GCOS-calculated signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC).
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 689.6 P 0.000754
AFFX-BioB-M_at 1147 P 0.000052
AFFX-BioB-3_at 564.6 P 0.00007
AFFX-BioC-5_at 1705.8 P 0.000052
AFFX-BioC-3_at 1998.7 P 0.000044
AFFX-BioDn-5_at 3368.5 P 0.000044
AFFX-BioDn-3_at 9480.6 P 0.000081
AFFX-CreX-5_at 17954.6 P 0.000052
AFFX-CreX-3_at 22290.6 P 0.000044
AFFX-DapX-5_at 46.6 A 0.147939
AFFX-DapX-M_at 33.3 A 0.340661
AFFX-DapX-3_at 7.2 A 0.979978
AFFX-LysX-5_at 3.5 A 0.712257
AFFX-LysX-M_at 42.1 A 0.574038
AFFX-LysX-3_at 5 A 0.699394
AFFX-PheX-5_at 3.6 A 0.868639
AFFX-PheX-M_at 4.1 A 0.904333
AFFX-PheX-3_at 35.3 A 0.645547
AFFX-ThrX-5_at 12.4 A 0.804734
AFFX-ThrX-M_at 25.9 A 0.574038

Total number of rows: 54675

Table truncated, full table size 1453 Kbytes.




Supplementary file Size Download File type/resource
GSM150196.CEL.gz 5.2 Mb (ftp)(http) CEL

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