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Sample GSM150199 Query DataSets for GSM150199
Status Public on May 01, 2007
Title PE_N_M169
Sample type RNA
 
Source name uterus - Proliferative endometrium from normal patient
Organism Homo sapiens
Characteristics Proliferative Phase Normal
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA from whole tissue was performed according the manufacturer's instructions.
Label biotin
Label protocol biotinylated cRNA was generated from 5.0 ug total RNA using the Affymetrix labeling protocol.
 
Hybridization protocol cRNA was fragmented and hybridized overnight to Affymetrix U133 Plus 2.0 Genechips.
Scan protocol Chips were scanned using the HR3000 scanner from Affymetrix.
Description Proliferative endometrium from normal patient
Data processing The data were analyzed using the Gene Chip Operating Software Version 1.2 using the Affymetrix default settings and global scaling as the normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
 
Submission date Dec 14, 2006
Last update date Aug 28, 2018
Contact name Linda Giudice
E-mail(s) giudice@obgyn.ucsf.edu
Phone 415-476-2039
Organization name University of California, San Francisco
Department OBGYN and RS
Lab Giudice Lab
Street address 513 Parnassus Ave. HSE 1619
City San Francisco
State/province CA
ZIP/Postal code 94122
Country USA
 
Platform ID GPL570
Series (1)
GSE6364 Gene Profiling of Endometrium Reveals Progesterone Resistance and Candidate Genetic Loci in Women with Endometriosis
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF Affymetrix Probe Set ID
VALUE GCOS-calculated signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC).
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1266.9 P 0.000509
AFFX-BioB-M_at 1826.6 P 0.00006
AFFX-BioB-3_at 1130.5 P 0.000095
AFFX-BioC-5_at 3193.4 P 0.000052
AFFX-BioC-3_at 3858.8 P 0.000044
AFFX-BioDn-5_at 5245.9 P 0.000044
AFFX-BioDn-3_at 20053.1 P 0.000095
AFFX-CreX-5_at 40803.5 P 0.000052
AFFX-CreX-3_at 50692.7 P 0.000044
AFFX-DapX-5_at 77.9 A 0.078002
AFFX-DapX-M_at 111.5 A 0.287726
AFFX-DapX-3_at 19.2 A 0.916408
AFFX-LysX-5_at 12.3 A 0.712274
AFFX-LysX-M_at 95.9 A 0.41138
AFFX-LysX-3_at 5.8 A 0.772364
AFFX-PheX-5_at 15.7 A 0.712257
AFFX-PheX-M_at 51.9 A 0.712257
AFFX-PheX-3_at 29.9 A 0.876428
AFFX-ThrX-5_at 18.7 A 0.916408
AFFX-ThrX-M_at 18.6 A 0.749223

Total number of rows: 54675

Table truncated, full table size 1454 Kbytes.




Supplementary file Size Download File type/resource
GSM150199.CEL.gz 4.4 Mb (ftp)(http) CEL

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