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Sample GSM150204 Query DataSets for GSM150204
Status Public on May 01, 2007
Title ESE_D_496
Sample type RNA
Source name uterus - Early secretory endometrium from patient with endometriosis
Organism Homo sapiens
Characteristics Early Secretory Phase Endometriosis
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA from whole tissue was performed according the manufacturer's instructions.
Label biotin
Label protocol biotinylated cRNA was generated from 5.0 ug total RNA using the Affymetrix labeling protocol.
Hybridization protocol cRNA was fragmented and hybridized overnight to Affymetrix U133 Plus 2.0 Genechips.
Scan protocol Chips were scanned using the HR3000 scanner from Affymetrix.
Description Early secretory endometrium from patient with endometriosis
Data processing The data were analyzed using the Gene Chip Operating Software Version 1.2 using the Affymetrix default settings and global scaling as the normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
Submission date Dec 14, 2006
Last update date Aug 28, 2018
Contact name Linda Giudice
Phone 415-476-2039
Organization name University of California, San Francisco
Department OBGYN and RS
Lab Giudice Lab
Street address 513 Parnassus Ave. HSE 1619
City San Francisco
State/province CA
ZIP/Postal code 94122
Country USA
Platform ID GPL570
Series (1)
GSE6364 Gene Profiling of Endometrium Reveals Progesterone Resistance and Candidate Genetic Loci in Women with Endometriosis
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF Affymetrix Probe Set ID
VALUE GCOS-calculated signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC).
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 1810.7 P 0.00034
AFFX-BioB-M_at 2626.5 P 0.000044
AFFX-BioB-3_at 1305.7 P 0.000052
AFFX-BioC-5_at 4759.8 P 0.000044
AFFX-BioC-3_at 6130.2 P 0.000044
AFFX-BioDn-5_at 8314.7 P 0.000044
AFFX-BioDn-3_at 19505.5 P 0.000044
AFFX-CreX-5_at 35374.2 P 0.000052
AFFX-CreX-3_at 40659.8 P 0.000044
AFFX-DapX-5_at 58.9 A 0.195266
AFFX-DapX-M_at 16.1 A 0.659339
AFFX-DapX-3_at 10.6 A 0.897835
AFFX-LysX-5_at 23.2 A 0.529762
AFFX-LysX-M_at 35.9 A 0.737173
AFFX-LysX-3_at 39.9 A 0.41138
AFFX-PheX-5_at 20.8 A 0.686277
AFFX-PheX-M_at 7.8 A 0.852082
AFFX-PheX-3_at 67.1 A 0.440646
AFFX-ThrX-5_at 54.4 A 0.699394
AFFX-ThrX-M_at 7.1 A 0.834139

Total number of rows: 54675

Table truncated, full table size 1454 Kbytes.

Supplementary file Size Download File type/resource
GSM150204.CEL.gz 4.9 Mb (ftp)(http) CEL

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