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Sample GSM150206 Query DataSets for GSM150206
Status Public on May 01, 2007
Title ESE_D_575
Sample type RNA
Source name uterus - Early secretory endometrium from patient with endometriosis
Organism Homo sapiens
Characteristics Early Secretory Phase Endometriosis
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA from whole tissue was performed according the manufacturer's instructions.
Label biotin
Label protocol biotinylated cRNA was generated from 5.0 ug total RNA using the Affymetrix labeling protocol.
Hybridization protocol cRNA was fragmented and hybridized overnight to Affymetrix U133 Plus 2.0 Genechips.
Scan protocol Chips were scanned using the HR3000 scanner from Affymetrix.
Description Early secretory endometrium from patient with endometriosis
Data processing The data were analyzed using the Gene Chip Operating Software Version 1.2 using the Affymetrix default settings and global scaling as the normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
Submission date Dec 14, 2006
Last update date Aug 28, 2018
Contact name Linda Giudice
Phone 415-476-2039
Organization name University of California, San Francisco
Department OBGYN and RS
Lab Giudice Lab
Street address 513 Parnassus Ave. HSE 1619
City San Francisco
State/province CA
ZIP/Postal code 94122
Country USA
Platform ID GPL570
Series (1)
GSE6364 Gene Profiling of Endometrium Reveals Progesterone Resistance and Candidate Genetic Loci in Women with Endometriosis
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF Affymetrix Probe Set ID
VALUE GCOS-calculated signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC).
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 1878.8 P 0.000509
AFFX-BioB-M_at 3809.6 P 0.000052
AFFX-BioB-3_at 2170 P 0.000147
AFFX-BioC-5_at 4647.9 P 0.00007
AFFX-BioC-3_at 5107.8 P 0.000044
AFFX-BioDn-5_at 5387.3 P 0.000052
AFFX-BioDn-3_at 27246.9 P 0.00006
AFFX-CreX-5_at 75002.9 P 0.000052
AFFX-CreX-3_at 82055.9 P 0.000044
AFFX-DapX-5_at 81.9 A 0.147939
AFFX-DapX-M_at 18.3 A 0.60308
AFFX-DapX-3_at 12.9 A 0.984817
AFFX-LysX-5_at 110.5 A 0.067661
AFFX-LysX-M_at 91 A 0.48511
AFFX-LysX-3_at 36.9 A 0.470241
AFFX-PheX-5_at 4.4 A 0.937071
AFFX-PheX-M_at 53.5 A 0.440646
AFFX-PheX-3_at 59.5 A 0.631562
AFFX-ThrX-5_at 25.1 A 0.645547
AFFX-ThrX-M_at 16.3 A 0.737173

Total number of rows: 54675

Table truncated, full table size 1453 Kbytes.

Supplementary file Size Download File type/resource
GSM150206.CEL.gz 4.5 Mb (ftp)(http) CEL

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