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Sample GSM150209 Query DataSets for GSM150209
Status Public on May 01, 2007
Title ESE_N_650
Sample type RNA
 
Source name uterus - Early secretory endometrium from normal patient
Organism Homo sapiens
Characteristics Early Secretory Phase Normal
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA from whole tissue was performed according the manufacturer's instructions.
Label biotin
Label protocol biotinylated cRNA was generated from 5.0 ug total RNA using the Affymetrix labeling protocol.
 
Hybridization protocol cRNA was fragmented and hybridized overnight to Affymetrix U133 Plus 2.0 Genechips.
Scan protocol Chips were scanned using the HR3000 scanner from Affymetrix.
Description Early secretory endometrium from normal patient
Data processing The data were analyzed using the Gene Chip Operating Software Version 1.2 using the Affymetrix default settings and global scaling as the normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
 
Submission date Dec 14, 2006
Last update date Aug 28, 2018
Contact name Linda Giudice
E-mail(s) giudice@obgyn.ucsf.edu
Phone 415-476-2039
Organization name University of California, San Francisco
Department OBGYN and RS
Lab Giudice Lab
Street address 513 Parnassus Ave. HSE 1619
City San Francisco
State/province CA
ZIP/Postal code 94122
Country USA
 
Platform ID GPL570
Series (1)
GSE6364 Gene Profiling of Endometrium Reveals Progesterone Resistance and Candidate Genetic Loci in Women with Endometriosis
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF Affymetrix Probe Set ID
VALUE GCOS-calculated signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC).
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 697.5 P 0.000754
AFFX-BioB-M_at 1197.7 P 0.00007
AFFX-BioB-3_at 642.2 P 0.000095
AFFX-BioC-5_at 2176.7 P 0.000052
AFFX-BioC-3_at 2781.5 P 0.000044
AFFX-BioDn-5_at 3967.2 P 0.000044
AFFX-BioDn-3_at 14289.4 P 0.000095
AFFX-CreX-5_at 25109.5 P 0.000052
AFFX-CreX-3_at 29811.2 P 0.000044
AFFX-DapX-5_at 7.2 A 0.52976
AFFX-DapX-M_at 24.6 A 0.455409
AFFX-DapX-3_at 11.1 A 0.783476
AFFX-LysX-5_at 26 A 0.396911
AFFX-LysX-M_at 59.6 A 0.455413
AFFX-LysX-3_at 43 A 0.116113
AFFX-PheX-5_at 2.6 A 0.941556
AFFX-PheX-M_at 6.8 A 0.737173
AFFX-PheX-3_at 30.2 A 0.686277
AFFX-ThrX-5_at 38.6 A 0.425962
AFFX-ThrX-M_at 12 A 0.544587

Total number of rows: 54675

Table truncated, full table size 1451 Kbytes.




Supplementary file Size Download File type/resource
GSM150209.CEL.gz 5.0 Mb (ftp)(http) CEL

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