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Sample GSM150225 Query DataSets for GSM150225
Status Public on May 01, 2007
Title MSE_N_M153
Sample type RNA
Source name uterus - Mid secretory endometrium from normal patient
Organism Homo sapiens
Characteristics Mid Secretory Phase Normal
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA from whole tissue was performed according the manufacturer's instructions.
Label biotin
Label protocol biotinylated cRNA was generated from 5.0 ug total RNA using the Affymetrix labeling protocol.
Hybridization protocol cRNA was fragmented and hybridized overnight to Affymetrix U133 Plus 2.0 Genechips.
Scan protocol Chips were scanned using the HR3000 scanner from Affymetrix.
Description Mid secretory endometrium from normal patient
Data processing The data were analyzed using the Gene Chip Operating Software Version 1.2 using the Affymetrix default settings and global scaling as the normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
Submission date Dec 14, 2006
Last update date Aug 28, 2018
Contact name Linda Giudice
Phone 415-476-2039
Organization name University of California, San Francisco
Department OBGYN and RS
Lab Giudice Lab
Street address 513 Parnassus Ave. HSE 1619
City San Francisco
State/province CA
ZIP/Postal code 94122
Country USA
Platform ID GPL570
Series (1)
GSE6364 Gene Profiling of Endometrium Reveals Progesterone Resistance and Candidate Genetic Loci in Women with Endometriosis
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF Affymetrix Probe Set ID
VALUE GCOS-calculated signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC).
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 988.6 P 0.000581
AFFX-BioB-M_at 1735.9 P 0.00006
AFFX-BioB-3_at 739 P 0.00007
AFFX-BioC-5_at 1799 P 0.00006
AFFX-BioC-3_at 1948.3 P 0.000044
AFFX-BioDn-5_at 5199.9 P 0.000044
AFFX-BioDn-3_at 13368.1 P 0.00007
AFFX-CreX-5_at 24723.9 P 0.000052
AFFX-CreX-3_at 29228.3 P 0.000044
AFFX-DapX-5_at 37.3 A 0.083592
AFFX-DapX-M_at 10.4 A 0.52976
AFFX-DapX-3_at 3 A 0.989683
AFFX-LysX-5_at 43.5 A 0.287743
AFFX-LysX-M_at 84.7 A 0.275146
AFFX-LysX-3_at 38.4 A 0.175328
AFFX-PheX-5_at 8 A 0.883887
AFFX-PheX-M_at 3.8 A 0.971543
AFFX-PheX-3_at 23.9 A 0.772364
AFFX-ThrX-5_at 41.1 A 0.39692
AFFX-ThrX-M_at 5.3 A 0.794288

Total number of rows: 54675

Table truncated, full table size 1452 Kbytes.

Supplementary file Size Download File type/resource
GSM150225.CEL.gz 5.0 Mb (ftp)(http) CEL

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