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Sample GSM1537874 Query DataSets for GSM1537874
Status Public on Nov 06, 2014
Title 30_pRCC2
Sample type genomic
 
Channel 1
Source name Renal Cells Tumor
Organism Homo sapiens
Characteristics cell type: Papillary renal cell carcinoma (pRCC)
rcc type: type 2
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from fresh, frozen or formol fixed-paraffin embedded fragments using Qiamp DNA mini kit.
Label Cy5
Label protocol DNA was labeled with the sureTag labeling kit accirding the agilent protocol
 
Channel 2
Source name commercial reference DNA from cell lines
Organism Homo sapiens
Characteristics sample type: Male/Female DNA control provided in SureTag Labeling Kit
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from fresh, frozen or formol fixed-paraffin embedded fragments using Qiamp DNA mini kit.
Label Cy3
Label protocol DNA was labeled with the sureTag labeling kit accirding the agilent protocol
 
 
Hybridization protocol DNA was hybridized with the hybridization kit according the Agilent protocol
Scan protocol We used a Surescan provided by Agilent and controled by SureScan Software
Data processing the data was processed on Cytogenomics 2.9.1.3 using the Default Analysis Method - CGH v2 proposed by Agilent
 
Submission date Nov 05, 2014
Last update date Nov 06, 2014
Contact name Thibault FABAS
Organization name CHU Nice
Lab Génétiques des Tumeurs Solides
Street address 28 av Valombrose
City NICE
ZIP/Postal code 06107
Country France
 
Platform ID GPL17964
Series (2)
GSE63000 Renal cells Carcinoma (RCC) Genome variation profiling by genome tiling array with Agilent CGH array
GSE63003 Renal cells Carcinoma (RCC) Genome variation profiling by genome tiling array

Data table header descriptions
ID_REF
VALUE log2 Ratio (Cy5/Cy3)

Data table
ID_REF VALUE
1 7.87E-02
2 0.00E+00
3 0.00E+00
4 0.00E+00
5 0.00E+00
6 0.00E+00
7 0.00E+00
8 0.00E+00
9 0.00E+00
10 6.38E-01
11 0.00E+00
12 0.00E+00
13 0.00E+00
14 0.00E+00
15 0.00E+00
16 0.00E+00
17 0.00E+00
18 4.31E-01
19 0.00E+00
20 0.00E+00

Total number of rows: 180880

Table truncated, full table size 2799 Kbytes.




Supplementary file Size Download File type/resource
GSM1537874_30_pRCC2.txt.gz 18.8 Mb (ftp)(http) TXT
Processed data included within Sample table

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