|
| Status |
Public on Nov 06, 2014 |
| Title |
4_pRCC1 |
| Sample type |
genomic |
| |
|
| Channel 1 |
| Source name |
ADN_pRCC1
|
| Organism |
Homo sapiens |
| Characteristics |
cell type: Papillary renal cell carcinoma (pRCC)
rcc type: type 1
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNA was extracted from fresh or frozen fragments using Qiamp DNA mini kit.
|
| Label |
Cy3
|
| Label protocol |
DNA was labeled with the CGX Nimblegen protocol
|
| |
|
| Channel 2 |
| Source name |
Promega Human Genomic DNA (G1471/G1521)
|
| Organism |
Homo sapiens |
| Characteristics |
sample type: reference
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNA was extracted from fresh or frozen fragments using Qiamp DNA mini kit.
|
| Label |
Cy5
|
| Label protocol |
DNA was labeled with the CGX Nimblegen protocol
|
| |
|
| |
| Hybridization protocol |
DNA was hybridized with the CGX Nimblegen protocol
|
| Scan protocol |
We used ScanRI software to control a ScanRI scanner
|
| Data processing |
the image data was processed by DEVA software provided by Perkin Elmer to obtain a .txt file. This file is transform by a soft tool ngpackager supplied by Nimblegen to obtain a .ggx file compiling log Ratio Cy3/Cy5 average for every probe (unknown/default parameters).
|
| |
|
| Submission date |
Nov 05, 2014 |
| Last update date |
Jan 20, 2015 |
| Contact name |
Thibault FABAS |
| Organization name |
CHU Nice
|
| Lab |
Génétiques des Tumeurs Solides
|
| Street address |
28 av Valombrose
|
| City |
NICE |
| ZIP/Postal code |
06107 |
| Country |
France |
| |
|
| Platform ID |
GPL19385 |
| Series (2) |
| GSE63001 |
Renal cells Carcinoma (RCC) Genome variation profiling by genome tiling array with Nimblegen CGX6 platform |
| GSE63003 |
Renal cells Carcinoma (RCC) Genome variation profiling by genome tiling array |
|
