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Sample GSM1537880 Query DataSets for GSM1537880
Status Public on Nov 06, 2014
Title 7_pRCC1
Sample type genomic
 
Channel 1
Source name ADN_pRCC1
Organism Homo sapiens
Characteristics cell type: Papillary renal cell carcinoma (pRCC)
rcc type: type 1
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from fresh or frozen fragments using Qiamp DNA mini kit.
Label Cy3
Label protocol DNA was labeled with the CGX Nimblegen protocol
 
Channel 2
Source name Promega Human Genomic DNA (G1471/G1521)
Organism Homo sapiens
Characteristics sample type: reference
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from fresh or frozen fragments using Qiamp DNA mini kit.
Label Cy5
Label protocol DNA was labeled with the CGX Nimblegen protocol
 
 
Hybridization protocol DNA was hybridized with the CGX Nimblegen protocol
Scan protocol We used ScanRI software to control a ScanRI scanner
Data processing the image data was processed by DEVA software provided by Perkin Elmer to obtain a .txt file. This file is transform by a soft tool ngpackager supplied by Nimblegen to obtain a .ggx file compiling log Ratio Cy3/Cy5 average for every probe (unknown/default parameters).
 
Submission date Nov 05, 2014
Last update date Dec 30, 2014
Contact name Thibault FABAS
Organization name CHU Nice
Lab Génétiques des Tumeurs Solides
Street address 28 av Valombrose
City NICE
ZIP/Postal code 06107
Country France
 
Platform ID GPL19385
Series (2)
GSE63001 Renal cells Carcinoma (RCC) Genome variation profiling by genome tiling array with Nimblegen CGX6 platform
GSE63003 Renal cells Carcinoma (RCC) Genome variation profiling by genome tiling array

Supplementary file Size Download File type/resource
GSM1537880_7_pRCC1.txt.gz 2.8 Mb (ftp)(http) TXT
Processed data are available on Series record
Processed data provided as supplementary file

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