|
Status |
Public on Nov 06, 2014 |
Title |
7_pRCC1 |
Sample type |
genomic |
|
|
Channel 1 |
Source name |
ADN_pRCC1
|
Organism |
Homo sapiens |
Characteristics |
cell type: Papillary renal cell carcinoma (pRCC) rcc type: type 1
|
Extracted molecule |
genomic DNA |
Extraction protocol |
DNA was extracted from fresh or frozen fragments using Qiamp DNA mini kit.
|
Label |
Cy3
|
Label protocol |
DNA was labeled with the CGX Nimblegen protocol
|
|
|
Channel 2 |
Source name |
Promega Human Genomic DNA (G1471/G1521)
|
Organism |
Homo sapiens |
Characteristics |
sample type: reference
|
Extracted molecule |
genomic DNA |
Extraction protocol |
DNA was extracted from fresh or frozen fragments using Qiamp DNA mini kit.
|
Label |
Cy5
|
Label protocol |
DNA was labeled with the CGX Nimblegen protocol
|
|
|
|
Hybridization protocol |
DNA was hybridized with the CGX Nimblegen protocol
|
Scan protocol |
We used ScanRI software to control a ScanRI scanner
|
Data processing |
the image data was processed by DEVA software provided by Perkin Elmer to obtain a .txt file. This file is transform by a soft tool ngpackager supplied by Nimblegen to obtain a .ggx file compiling log Ratio Cy3/Cy5 average for every probe (unknown/default parameters).
|
|
|
Submission date |
Nov 05, 2014 |
Last update date |
Dec 30, 2014 |
Contact name |
Thibault FABAS |
Organization name |
CHU Nice
|
Lab |
Génétiques des Tumeurs Solides
|
Street address |
28 av Valombrose
|
City |
NICE |
ZIP/Postal code |
06107 |
Country |
France |
|
|
Platform ID |
GPL19385 |
Series (2) |
GSE63001 |
Renal cells Carcinoma (RCC) Genome variation profiling by genome tiling array with Nimblegen CGX6 platform |
GSE63003 |
Renal cells Carcinoma (RCC) Genome variation profiling by genome tiling array |
|