GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM160378 Query DataSets for GSM160378
Status Public on Jan 01, 2008
Title Prostate tumor patient 37 (HG-U133A 2.0 Array)
Sample type RNA
Source name Adenocarcinoma (NOS) of the prostate
Organism Homo sapiens
Characteristics race: African American
smoking status: Unknown
gleason sum: 7
pt stage: 3
extraprostatic extension: None
perineural invasion: Yes
seminal vesicle invasion: Yes
are surgical margins involved: All surgical margins are free of tumor
angio lymphatic invasion: No
Extracted molecule total RNA
Extraction protocol TRIzol
Label biotin
Label protocol Standard Affy protocol
Hybridization protocol Standard Affy protocol
Scan protocol Standard Affy protocol
Description Race: African American, Smoking Status: Unknown, Gleason Sum: 7, PT Stage: 3, Extraprostatic Extension: None, Perineural Invasion: Yes, Seminal vesicle invasion: Yes, Are Surgical margins involved: All surgical margins are free of tumor, Angio lymphatic invasion: No
Data processing MAS5
Submission date Feb 05, 2007
Last update date Apr 16, 2015
Contact name Robert Scott Hudson
Organization name NIH
Department NCI
Lab The Laboratory of Human Carcinogenesis
Street address National Cancer Institute Room Blgd.37/3044
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
Platform ID GPL571
Series (2)
GSE6956 Tumor Immunobiological Differences in Prostate Cancer between African-American and European-American Men
GSE7055 Expression of microRNAs and Protein-coding Genes Associated with Perineural Invasion in Prostate Cancer

Data table header descriptions
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
1007_s_at 2586.072505 P
1053_at 247.6143999 P
117_at 76.76349799 P
121_at 430.4285301 P
1255_g_at 26.11397021 P
1294_at 521.2365086 P
1316_at 46.239647 A
1320_at 84.20446739 A
1405_i_at 515.8780047 P
1431_at 83.45780605 P
1438_at 195.4723308 P
1487_at 330.5767136 P
1494_f_at 82.8520111 P
1598_g_at 2096.060571 P
160020_at 276.021363 P
1729_at 650.7952683 P
1773_at 126.9711463 P
177_at 96.48745208 P
179_at 336.7893504 M
1861_at 209.03896 P

Total number of rows: 22277

Table truncated, full table size 540 Kbytes.

Supplementary file Size Download File type/resource
GSM160378.CEL.gz 2.2 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap