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Sample GSM160381 Query DataSets for GSM160381
Status Public on Jan 01, 2008
Title Prostate tumor patient 40 (HG-U133A 2.0 Array)
Sample type RNA
 
Source name Adenocarcinoma (NOS) of the prostate
Organism Homo sapiens
Characteristics race: Caucasian
smoking status: Current
gleason sum: 7
pt stage: 3
extraprostatic extension: Multifocal
perineural invasion: Yes
seminal vesicle invasion: No
are surgical margins involved: Tumor focal at margin
angio lymphatic invasion: No
Extracted molecule total RNA
Extraction protocol TRIzol
Label biotin
Label protocol Standard Affy protocol
 
Hybridization protocol Standard Affy protocol
Scan protocol Standard Affy protocol
Description Race: Caucasian, Smoking Status: Current, Gleason Sum: 7, PT Stage: 3, Extraprostatic Extension: Multifocal, Perineural Invasion: Yes, Seminal vesicle invasion: No, Are Surgical margins involved: Tumor focal at margin, Angio lymphatic invasion: No
Data processing MAS5
 
Submission date Feb 05, 2007
Last update date Apr 16, 2015
Contact name Robert Scott Hudson
Organization name NIH
Department NCI
Lab The Laboratory of Human Carcinogenesis
Street address National Cancer Institute Room Blgd.37/3044
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL571
Series (2)
GSE6956 Tumor Immunobiological Differences in Prostate Cancer between African-American and European-American Men
GSE7055 Expression of microRNAs and Protein-coding Genes Associated with Perineural Invasion in Prostate Cancer

Data table header descriptions
ID_REF Affy ID
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF VALUE ABS_CALL
1007_s_at 1954.637463 P
1053_at 184.8189045 P
117_at 47.24372682 A
121_at 600.9336862 P
1255_g_at 35.0873142 A
1294_at 271.2397931 P
1316_at 77.29826921 P
1320_at 96.70787868 A
1405_i_at 152.9828911 P
1431_at 44.15116619 P
1438_at 352.6091105 P
1487_at 272.4024464 M
1494_f_at 60.57767856 A
1598_g_at 1523.828914 P
160020_at 257.9304958 P
1729_at 815.6785936 P
1773_at 140.1514045 A
177_at 45.95382977 M
179_at 315.9093798 A
1861_at 348.9359714 P

Total number of rows: 22277

Table truncated, full table size 540 Kbytes.




Supplementary file Size Download File type/resource
GSM160381.CEL.gz 2.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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