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Sample GSM160390 Query DataSets for GSM160390
Status Public on Jan 01, 2008
Title Prostate tumor patient 49 (HG-U133A 2.0 Array)
Sample type RNA
 
Source name Adenocarcinoma (NOS) of the prostate
Organism Homo sapiens
Characteristics race: African American
smoking status: Unknown
gleason sum: 7
pt stage: 2
extraprostatic extension: None
perineural invasion: Yes
seminal vesicle invasion: No
are surgical margins involved: Tumor focal at margin
angio lymphatic invasion: No
Extracted molecule total RNA
Extraction protocol TRIzol
Label biotin
Label protocol Standard Affy protocol
 
Hybridization protocol Standard Affy protocol
Scan protocol Standard Affy protocol
Description Race: African American, Smoking Status: Unknown, Gleason Sum: 7, PT Stage: 2, Extraprostatic Extension: None, Perineural Invasion: Yes, Seminal vesicle invasion: No, Are Surgical margins involved: Tumor focal at margin, Angio lymphatic invasion: No
Data processing MAS5
 
Submission date Feb 05, 2007
Last update date Apr 16, 2015
Contact name Robert Scott Hudson
Organization name NIH
Department NCI
Lab The Laboratory of Human Carcinogenesis
Street address National Cancer Institute Room Blgd.37/3044
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL571
Series (2)
GSE6956 Tumor Immunobiological Differences in Prostate Cancer between African-American and European-American Men
GSE7055 Expression of microRNAs and Protein-coding Genes Associated with Perineural Invasion in Prostate Cancer

Data table header descriptions
ID_REF Affy ID
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF VALUE ABS_CALL
1007_s_at 1920.639373 P
1053_at 169.1547674 P
117_at 67.12928115 P
121_at 428.3541023 P
1255_g_at 9.471142505 A
1294_at 746.9872428 P
1316_at 75.90063955 A
1320_at 55.07981057 A
1405_i_at 619.0121893 P
1431_at 82.82383469 P
1438_at 268.8035308 P
1487_at 439.372075 P
1494_f_at 90.78940109 P
1598_g_at 2247.223699 P
160020_at 320.9700957 P
1729_at 633.8076347 P
1773_at 114.7723266 P
177_at 81.45203184 P
179_at 362.6419584 A
1861_at 299.8493558 P

Total number of rows: 22277

Table truncated, full table size 540 Kbytes.




Supplementary file Size Download File type/resource
GSM160390.CEL.gz 2.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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