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Sample GSM161902 Query DataSets for GSM161902
Status Public on Feb 12, 2007
Title NA15510_Sty_COMM_rep1
Sample type genomic
 
Source name DNA was obtained from NIGHS Human Genetic Cell Repository
Organism Homo sapiens
Characteristics Gender: Female Cell lot number: 4
Biomaterial provider Coriell NA15510 http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA15510
Extracted molecule genomic DNA
Extraction protocol DNA was obtained from NIGHS Human Genetic Cell Repository
Label DNA Labeling Reagent, Affymetrix, Inc.
Label protocol According to standard Affymetrix procedures
 
Hybridization protocol According to standard Affymetrix procedures
Scan protocol According to standard Affymetrix procedures
Description Samples NA10851 or NA15510 were hybridized to 500K mapping arrays in triplicates
Data processing Genotyes reported by dynamic modeling algorithm
 
Submission date Feb 12, 2007
Last update date Apr 17, 2008
Contact name Fan Shen
E-mail(s) Fan_Shen@affymetrix.com
Phone 408-731-5762
Organization name Affymetrix, Inc
Street address 3420 Central Expressway
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Platform ID GPL3720
Series (1)
GSE5173 Global variation of copy number in the human genome_COMM

Data table header descriptions
ID_REF Affymetrix probe set ID
VALUE Genotype call
DETECTION P-VALUE Detection pValue
MedianS Median signal
RAS1 Relative allele signal for data in the first probe group
RAS2 Relative allele signal for data in the second probe group

Data table
ID_REF VALUE DETECTION P-VALUE MedianS RAS1 RAS2
SNP_A-1855402 BB 0.007813 12.468 0.021290 0.045974
SNP_A-4249904 BB 0.007813 23.452 0.000000 0.017964
SNP_A-2174835 AA 0.007813 13.311 0.995916 0.966942
SNP_A-1880271 BB 0.007813 12.711 0.057428 0.041787
SNP_A-2313232 BB 0.007813 12.775 0.099234 0.000000
SNP_A-1790918 AA 0.023438 15.528 1.000000 1.000000
SNP_A-1812820 AA 0.007813 13.856 0.988174 0.967742
SNP_A-1825137 AA 0.023438 6.272 0.845565 1.000000
SNP_A-1855057 BB 0.007813 21.003 0.071816 0.000000
SNP_A-1855068 AA 0.007813 17.499 1.000000 0.927265
SNP_A-4249854 BB 0.007813 7.867 0.000000 0.000000
SNP_A-4249855 AA 0.007813 14.945 1.000000 0.945652
SNP_A-1855365 BB 0.023438 10.640 0.150110 0.019667
SNP_A-1856257 AA 0.007813 25.333 1.000000 1.000000
SNP_A-1862900 BB 0.007813 20.794 0.010908 0.038286
SNP_A-1894450 BB 0.007813 12.569 0.101483 0.046626
SNP_A-1900543 AA 0.007813 9.176 0.939972 0.919175
SNP_A-1905760 AA 0.007813 7.833 0.843252 0.945141
SNP_A-1907304 BB 0.007813 11.945 0.048860 0.068851
SNP_A-1941504 BB 0.007813 14.924 0.000000 0.000000

Total number of rows: 238304

Table truncated, full table size 11761 Kbytes.




Supplementary file Size Download File type/resource
GSM161902.CEL.gz 28.1 Mb (ftp)(http) CEL
GSM161902.raw.txt.gz 26.4 Mb (ftp)(http) TXT

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