NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1632038 Query DataSets for GSM1632038
Status Public on Mar 12, 2015
Title EC_1458_ChipD_5mC_Expt2
Sample type genomic
 
Source name Genomic DNA, sonicated, anti-5mC
Organism Homo sapiens
Characteristics treatment: IP
tissue: testicular embryonic carcinoma
source tissue: testis
antibody: Anti-5mC
Treatment protocol Untreated and frozen before DNA extraction
Growth protocol Primary tumors and normal tissues without any culture
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was directly extracted from tissues using column-based purification method
Label Biotin
Label protocol Samples were prepared and hybridized to GeneChip Human Tiling 2.0R Array according to Affymetrix specifications.
 
Hybridization protocol Samples were prepared and hybridized to GeneChip Human Tiling 2.0R Array according to Affymetrix specifications.
Scan protocol The tiling arrays were scanned using an Affymetrix GeneChip Scanner GCS3000 according to manufacturer's instruction.
Description 1458 D_pvalue_Hs_NCBIv36.BED
embryonal carcinoma
Data processing The signal intensity data was analyzed with the Affymetrix Tiling Analysis Software (version 1.1) using parameters: two-sided test, 250 bp bandwidth and perfect match only.
The resulting BED files are generated by the Affymetrix Tiling Analysis Software (version 1.1) using parameters: Threshold = 20 (p < 0.01), Gap = 100.
 
Submission date Mar 11, 2015
Last update date Mar 12, 2015
Contact name Hoi-Hung Cheung
E-mail(s) cheunghh@cuhk.edu.hk
Phone (852)39439796
Organization name The Chinese University of Hong Kong
Department School of Biomedical Sciences
Street address Rm.708A, LKS Integrated Biomedical Sciences Bldg.
City CUHK, Shatin
State/province N.T.
ZIP/Postal code n.a.
Country Hong Kong
 
Platform ID GPL4913
Series (1)
GSE66784 Genome-wide DNA methylation analysis on testicular embryonal carcinoma

Supplementary file Size Download File type/resource
GSM1632038_Me-1458-D-2.CEL.gz 25.5 Mb (ftp)(http) CEL
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap