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Sample GSM1655724 Query DataSets for GSM1655724
Status Public on Aug 01, 2016
Title conventional cultiver soybean diet, bio rep5
Sample type RNA
Source name SD rat liver, male
Organism Rattus norvegicus
Characteristics tissue: liver
strain: Male Sprague-Dawley rats
age: 4 weeks of age
diet: rats were adapted to the condition for 5 days and fed conventional cultiver soybean diet for 21 days
Treatment protocol Animals were randomly divided into 4 groups and fed an experimental diet for 21 days. The experimental diets were as follows: a diet containing 200 g/kg casein (Cas) ;a diet containing two proteins derived equally from casein and Fukuyutaka (conventional cultiver soybean) (F10); a diet containing two proteins derived from casein and Yukipirika (hihg-isoflavone soybean) in the proportion of three parts to one (Y05); a diet containing two proteins derived equally from casein and Yukipirika (Y10).
Growth protocol Male Sprague-Dawley rats were obtained from Charles River Japan (Kanagawa, Japan) at 4 week of age. Animals were housed individually in a room with a controlled temperature (20-22ºC), humidity (55-65%), and 12-h-light/-dark cycle. During their adaptation to the conditions, rats were fed a commercial non-purified diet (Type NMF; Oriental Yeast Co., Tokyo, Japan) for 5 days. Rats were allowed free access to diet and water.
Extracted molecule total RNA
Extraction protocol Acid guanidinium thiocyanate-phenol-chloroform extraction
Label biotin
Label protocol GeneChip® 3' IVT Express Kit
Hybridization protocol GeneChip® Hybridization Oven 640 (Affymetrix)
Scan protocol GeneChip® Scanner 3000 7G (Affymetrix)
Description normalized by SuperNORM data service
Data processing The perfect match data were normalized by using the SuperNORM data service (Skylight Biotech Inc., Akita, Japan) according to a three-parameter lognormal distribution model.
Submission date Apr 12, 2015
Last update date Aug 01, 2016
Contact name Tomokazu Konishi
Phone +81-18-872-1603
Organization name Akita Prefectural University
Department Bioresource Sciences
Lab Molecular Genetics
Street address Shimoshinjyo Nishi
City Akita
State/province Akita
ZIP/Postal code 010-0195
Country Japan
Platform ID GPL1355
Series (1)
GSE67782 The effect of dietary soybeans and their isoflavone content on the expression profiles of mRNAs in liver of rats

Data table header descriptions
VALUE parametric: z-score of logarithms

Data table
1367452_at 1.497249558
1367453_at 1.592777505
1367454_at 1.411342589
1367455_at 1.848944107
1367456_at 1.991950808
1367457_at 1.171952051
1367458_at 1.021296363
1367459_at 2.227267839
1367460_at 1.610384192
1367461_at 1.080738304
1367462_at 1.603638171
1367463_at 1.771330111
1367464_at 1.311325407
1367465_at 1.743459315
1367466_at 1.485477184
1367467_at 1.940314242
1367468_at 1.476585905
1367469_at 1.918367714
1367470_at 1.411277537
1367471_at 1.291328924

Total number of rows: 31099

Table truncated, full table size 663 Kbytes.

Supplementary file Size Download File type/resource
GSM1655724_F10-6_Liv_131213.CEL.gz 2.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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