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Sample GSM1679456 Query DataSets for GSM1679456
Status Public on Nov 25, 2015
Title MfaD013-2
Sample type SRA
 
Source name brain tissue of aborted newborn wild-type monkey
Organism Macaca fascicularis
Characteristics genotype: wild-type
age: P0
tissue: cortical region
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from brain tissues of wild-type or MECP2 transgenic monkey by Trizol reagent (Invitrogen) separately.
RNA library using standard Ion proton RNA-Seq Kit v2.0 protocol
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Ion Torrent Proton
 
Data processing Reads filtering under criteria removing reads with 20% of the base quality lower than 13
Mapsplice v2.1.6 mapping to reference genome
count counting
Genome_build: mfa5.0
Supplementary_files_format_and_content: TXT file contain counts for each sample
 
Submission date May 11, 2015
Last update date May 15, 2019
Contact name Zilong Qiu
E-mail(s) zqiu@ion.ac.cn
Organization name Chinese Academic of Science
Street address No.320, Rd. Yueyang
City Shanghai
ZIP/Postal code 200435
Country China
 
Platform ID GPL18726
Series (1)
GSE57974 Brain-specific transcriptome analysis in MECP2 transgenic monkeys
Relations
BioSample SAMN03651361
SRA SRX1022753

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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