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Sample GSM1686 Query DataSets for GSM1686
Status Public on Jun 27, 2002
Title 110 Antigens, mix #2, 12-9-99
Sample type protein
 
Channel 1
Source name Reference antigens
Organism Homo sapiens
Extracted molecule protein
 
Channel 2
Source name Test antigens
Organism Homo sapiens
Extracted molecule protein
 
 
Description Category: Protein array
Subcategory: Antibody
Scanning Software: ScanAlyze
Software version: 2.44
Lot batch = 8cl111
 
Submission date May 23, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL173
Series (2)
GSE43 Antibody Arrays Figure 1
GSE50 Antibody Array Figures

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 63 61 2 85 88 87 63 62 .124 0 .793 10 1 .107 1297 384 106 128 293 315
2 61 60 3 87 1 86 86 63 63 .009 0 .688 11 1 3 .333 .007 1297 384 105 127 328 350
3 63 62 86 87 87 63 63 .016 0 .706 9 1 0 .014 1297 384 105 127 363 385
4 66 62 2 86 90 90 66 63 .039 0 .5 8 1 .016 1297 384 105 127 398 420
5 66 63 1 93 95 95 69 68 .011 0 .842 8 1 .005 1297 384 105 127 433 455
6 66 63 4 92 95 95 69 67 .003 0 .654 14 0 .002 1297 384 105 127 468 490
7 66 65 2 92 98 97 71 67 0 1.077 9 0 1297 384 105 127 504 526
8 66 65 1 95 101 101 74 69 .04 0 .773 9 0 .034 1297 384 105 127 539 561
9 67 64 6 110 2 109 108 79 1 80 0 -2.585 .825 15 0 3 6 .333 .167 1297 384 105 127 574 596 -2.585
10 69 65 2 106 110 109 80 77 .079 0 .87 9 0 .075 1297 384 105 127 609 631
11 66 65 3 109 115 114 83 80 .037 0 .885 11 0 .033 1297 384 105 127 644 666
12 66 65 2 110 118 116 85 80 0 .864 9 0 1297 384 105 127 680 702
13 63 61 3 84 86 86 63 61 .06 0 .963 11 2 .055 1297 384 141 163 293 315
14 64 62 3 82 85 85 62 60 0 .938 10 1 1297 384 141 163 328 350
15 64 63 1 85 89 87 63 62 0 .875 8 2 1297 384 141 163 363 385
16 65 63 6 88 93 93 68 64 .023 0 .8 15 0 .019 1297 384 141 163 398 420
17 65 63 6 91 98 97 71 66 0 .733 14 0 1297 384 141 163 433 455
18 66 64 4 87 97 97 71 63 0 .556 12 0 1297 384 141 163 468 490
19 67 65 20 76 100 100 73 55 0 .688 30 0 1297 384 141 163 504 526
20 68 65 21 75 103 102 75 55 0 .673 32 0 1297 384 140 162 539 561

Total number of rows: 2304

Table truncated, full table size 213 Kbytes.




Supplementary data files not provided
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