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Sample GSM1689 Query DataSets for GSM1689
Status Public on Jun 27, 2002
Title 110 Antigens, mix #5, 12-9-99
Sample type protein
 
Channel 1
Source name Reference antigens
Organism Homo sapiens
Extracted molecule protein
 
Channel 2
Source name Test antigens
Organism Homo sapiens
Extracted molecule protein
 
 
Description Category: Protein array
Subcategory: Antibody
Scanning Software: ScanAlyze
Software version: 2.44
Lot batch = 8cl114
 
Submission date May 23, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL173
Series (2)
GSE43 Antibody Arrays Figure 1
GSE50 Antibody Array Figures

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 87 66 3 47 2 46 45 31 1 32 .003 0 -1.585 .636 10 9 1.5 3 .667 .333 0 1144 349 201 222 251 272 -1.585
2 137 65 45 2 44 43 29 2 31 .04 0 .857 7 8 0 .001 761 349 200 221 286 307
3 66 64 2 45 1 44 44 30 1 31 .021 0 -1 .568 13 6 2 2 .5 .5 .013 717 349 200 221 321 342 -1
4 68 68 2 46 46 46 31 31 .018 0 .608 6 7 0 .012 685 349 199 220 356 377
5 69 67 2 46 46 46 31 31 0 .743 8 6 0 684 349 199 220 391 412
6 67 65 5 47 1 47 46 31 1 32 .041 0 -2.322 .482 14 6 5 5 .2 .2 .031 658 349 198 219 426 447 -2.322
7 67 65 45 46 45 31 31 .035 0 .484 8 5 0 .022 664 349 198 219 462 483
8 66 64 8 45 48 46 31 31 .102 0 .455 16 6 .121 609 349 197 218 497 518
9 66 63 4 46 48 46 31 31 .089 0 .5 12 6 0 .115 610 349 197 218 532 553
10 65 64 5 47 47 47 32 32 .016 0 .612 13 7 0 .01 588 349 196 217 567 588
11 67 67 46 48 47 32 31 0 .714 6 4 0 587 349 196 217 602 623
12 67 66 3 49 50 49 34 34 .004 0 .533 9 4 0 .002 567 349 195 216 637 658
13 66 64 6 46 1 45 45 31 31 0 .88 13 8 6 .167 1096 349 236 257 251 272
14 107 65 57 45 1 45 44 30 1 31 0 -5.833 .692 12 10 57 57 .018 .018 748 349 235 256 286 307 -5.833
15 66 65 2 48 3 45 45 31 2 33 0 0 .667 9 10 .667 1 1.5 1 709 349 235 256 321 342 0
16 67 67 962 112 65 48 47 32 45 77 .954 0 -4.418 .438 21 16 14.8 21.378 .068 .047 .056 681 349 234 255 357 378 -4.418
17 69 69 1 47 48 48 33 32 0 .75 8 4 686 349 234 255 392 413
18 67 66 2 46 47 48 33 31 0 .438 11 6 643 349 233 254 427 448
19 68 66 20 45 48 48 33 31 0 .4 32 4 641 349 233 254 462 483
20 66 65 22 43 48 49 34 29 0 .353 35 2 601 349 232 253 497 518

Total number of rows: 2304

Table truncated, full table size 221 Kbytes.




Supplementary data files not provided
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