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Sample GSM1690

Query DataSets for GSM1690

Status

Public on Jun 27, 2002

Title

110 Antigens, mix #6, 8cl115

Sample type

protein

Channel 1

Source name

Reference antigens

Organism

Extracted molecule

protein

Channel 2

Source name

Test antigens

Organism

Extracted molecule

protein

Description

Category: Protein array
Subcategory: Antibody
Scanning Software: ScanAlyze
Software version: 2.44
Lot batch = 8cl115

Submission date

May 23, 2002

Last update date

Nov 21, 2005

Organization

Stanford Microarray Database (SMD)

E-mail(s)

array@genome.stanford.edu

Phone

650-498-6012

URL

http://genome-www5.stanford.edu/

Department

Stanford University, School of Medicine

Street address

300 Pasteur Drive

City

Stanford

State/province

CA

ZIP/Postal code

94305

Country

USA

Platform ID

Series (2)

GSE43	Antibody Arrays Figure 1
GSE50	Antibody Array Figures

Data table header descriptions
ID_REF
CH1B_MEAN	mean channel 1 background
CH1B_MEDIAN	median channel 1 background
CH1D_MEAN	difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN	mean channel 2 signal
CH2D_MEAN	difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN	mean of channel 2 background
CH2B_MEDIAN	median of channel 2 background
CH2BN_MEDIAN	normalized CH2B_MEDIAN
CH2DN_MEAN	normalized CH2D_MEAN
CH2IN_MEAN	normalized CH2I_MEAN
CORR	simple correlation coefficient of channel 1 and channel 2 pixels
FLAG	user defined flag (default=0)
VALUE	same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD	standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD	standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN	ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN	ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN	ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN	ratio of CH2DN_MEAN and CH1DN_MEAN
REGR	slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX	total number of background pixels
TOT_SPIX	total number of signal (spot) pixels
TOP	vertical, short-axis spot ellipse minimum pixel coordinate
BOT	vertical, short-axis spot ellipse maximum pixel coordinate
LEFT	horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT	horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE	aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF	CH1B_MEAN	CH1B_MEDIAN	CH1D_MEAN	CH2I_MEAN	CH2D_MEAN	CH2B_MEAN	CH2B_MEDIAN	CH2BN_MEDIAN	CH2DN_MEAN	CH2IN_MEAN	CORR	FLAG	VALUE	PIX_RAT2_MEDIAN	PERGTBCH1I_1SD	PERGTBCH2I_1SD	RAT1_MEAN	RAT1N_MEAN	RAT2_MEAN	RAT2N_MEAN	REGR	TOT_BPIX	TOT_SPIX	TOP	BOT	LEFT	RIGHT	UNF_VALUE
1	80	77		32		33	32	43		43	.034	0		.5	6	8			0		.011	1332	349	255	276	212	233
2	79	77		35	2	33	33	45	2	47	.061	0		.395	5	11			0		.029	729	349	254	275	247	268
3	72	71	3	33		34	34	46		45		0		.447	12	7						316	349	254	275	282	303
4	74	72	1	36	1	36	35	47	2	49	.007	0	1	.5	6	10	1	.5	1	2	.004	262	349	253	274	317	338	1
5	68	65	8	35	1	35	34	46	1	47	.032	0	-3	.5	15	9	8	8	.125	.125	.015	252	349	253	274	352	373	-3
6	69	66	5	34	1	34	33	45	1	46		0	-2.322	.4	12	11	5	5	.2	.2		274	349	252	273	387	408	-2.322
7	70	67	2	34		35	35	47		46	.036	0		.561	9	8					.02	286	349	252	273	423	444
8	66	64	5	34		35	34	46		46	.076	0		.381	12	8			0		.04	280	349	251	272	458	479
9	66	65	4	34		37	37	50		46		0		.482	11	4						262	349	251	272	493	514
10	67	67	3	35		36	36	49		47	.021	0		.5	9	7					.012	272	349	250	271	528	549
11	66	63	7	36	2	34	34	46	3	49	.027	0	-1.222	.433	16	10	3.5	2.333	.286	.429	.013	269	349	250	271	563	584	-1.222
12	64	62	9	35		35	35	47		47	.008	0		.478	17	9			0		.004	278	349	249	270	598	619
13	79	75	2	32		33	33	45		43	.02	0		.467	10	6					.008	1332	349	290	311	212	233
14	74	73	12	37	3	34	34	46	4	50	.096	0	-1.585	.375	20	13	4	3	.25	.333	.043	683	349	289	310	247	268	-1.585
15	73	72	4	35		36	36	49		47	.057	0		.406	11	5					.027	216	349	289	310	282	303
16	72	70	7	35		35	35	47		47	.006	0		.462	13	9			0		.003	168	349	288	309	318	339
17	71	69	7	36	1	35	35	47	2	49		0	-1.807	.381	15	10	7	3.5	.143	.286		170	349	288	309	353	374	-1.807
18	71	71	9	34		36	35	47		46		0		.4	16	7						162	349	287	308	388	409
19	75	73	24	35		36	36	49		47		0		.29	33	9						163	349	287	308	423	444
20	72	71	19	33		35	34	46		45		0		.277	29	7						152	349	286	307	458	479

Total number of rows: 2304

Table truncated, full table size 225 Kbytes.

Supplementary data files not provided

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