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Sample GSM1691 Query DataSets for GSM1691
Status Public on Jun 27, 2002
Title Antigen array, 10X serum, 3-9-00
Sample type protein
 
Channel 1
Source name Reference antibodies
Organism Homo sapiens
Extracted molecule protein
 
Channel 2
Source name Test antibodies, mix #1
Organism Homo sapiens
Extracted molecule protein
 
 
Description Category: Protein array
Subcategory: Antibody
Scanning Software: GenePix
Software version: 2.0.1.16
Lot batch = 14cl44
 
Submission date May 23, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL172
Series (2)
GSE45 Antibody Arrays Figures 2, 4 and 6
GSE50 Antibody Array Figures

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 59 57 213 113 43 72 70 47 29 76 .345 0 -2.875 .144 10 55 4.953 7.338 .202 .136 .178 340 52 186 194 146 154 -2.875
2 59 57 68 2409 2337 75 72 49 1578 1626 .739 0 4.536 37.096 96 10 .029 .043 34.368 23.201 24.384 420 52 184 193 183 192 4.536
3 59 57 1297 856 783 75 73 49 529 578 .868 0 -1.295 .584 10 10 1.656 2.454 .604 .408 .565 340 52 184 192 222 230 -1.295
4 60 60 217 3143 3071 74 72 49 2073 2122 .875 0 3.256 12.759 10 10 .071 .105 14.152 9.554 12.793 420 52 183 192 258 267 3.256
5 60 56 30 93 13 111 80 54 9 63 0 0 -1.773 .81 23 30 2.308 3.418 .433 .293 .06 1272 156 179 194 293 308 -1.773
6 66 54 16 65 1 68 64 43 1 44 .114 0 -4.567 .674 0 0 16 23.701 .063 .042 .814 1272 156 178 193 330 345 -4.567
7 57 54 68 3273 3207 67 66 45 2165 2210 .696 0 4.993 49.833 98 10 .021 .031 47.162 31.838 26.702 420 52 182 191 372 381 4.993
8 59 58 55 144 75 72 69 47 51 97 .578 0 -.119 1.485 94 98 .733 1.086 1.364 .921 .751 340 52 182 190 410 418 -.119
9 55 53 237 304 238 69 66 45 161 205 .841 0 -.561 1.11 10 98 .996 1.475 1.004 .678 .906 420 52 180 189 447 456 -.561
10 56 53 36 15255 15176 85 79 53 10245 10298 .533 0 8.153 91.833 80 10 .002 .004 421.556 284.583 178.777 420 52 180 189 484 493 8.153
11 59 58 23 106 34 74 72 49 23 72 .613 0 -.003 1.25 41 41 .676 1.002 1.478 .998 1.043 1272 156 218 233 143 158 -.003
12 60 58 9 77 4 75 73 49 3 52 .122 0 -1.737 .973 26 19 2.25 3.333 .444 .3 .134 1272 156 218 233 181 196 -1.737
13 59 57 2343 1064 987 80 77 52 666 718 .857 0 -1.814 .438 10 10 2.374 3.516 .421 .284 .352 340 52 222 230 222 230 -1.814
14 60 58 1202 135 65 73 70 47 44 91 .674 0 -4.776 .063 10 76 18.492 27.393 .054 .037 .041 420 52 220 229 259 268 -4.776
15 58 56 518 22917 22844 84 73 49 15422 15471 .921 0 4.896 43.756 93 98 .023 .034 44.1 29.771 39.81 656 80 219 230 296 307 4.896
16 60 58 2529 760 695 67 65 44 469 513 .787 0 -2.43 .289 10 10 3.639 5.39 .275 .186 .255 420 52 219 228 334 343 -2.43
17 59 59 2511 440 373 68 67 45 252 297 .837 0 -3.318 .154 10 10 6.732 9.972 .149 .1 .126 340 52 220 228 373 381 -3.318
18 59 57 37 98 31 70 67 45 21 66 .586 0 -.822 .923 47 38 1.194 1.768 .838 .566 .488 1272 156 215 230 406 421 -.822
19 55 54 191 2049 1963 87 86 58 1325 1383 .58 0 2.795 8.89 10 10 .097 .144 10.277 6.938 5.783 340 52 219 227 448 456 2.795
20 56 54 18 98 27 73 71 48 18 66 .348 0 .018 1.791 44 37 .667 .988 1.5 1.013 .53 1272 156 214 229 481 496 .018

Total number of rows: 1440

Table truncated, full table size 161 Kbytes.




Supplementary data files not provided
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