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Sample GSM1693

Query DataSets for GSM1693

Status

Public on Jun 27, 2002

Title

Antigen array, 100X serum-133

Sample type

protein

Channel 1

Source name

Reference antibodies

Organism

Extracted molecule

protein

Channel 2

Source name

Test antibodies, mix #6

Organism

Extracted molecule

protein

Description

Category: Protein array
Subcategory: Antigen
Scanning Software: GenePix
Software version: 2.0.1.16
Lot batch = 14cl33

Submission date

May 23, 2002

Last update date

Nov 21, 2005

Organization

Stanford Microarray Database (SMD)

E-mail(s)

array@genome.stanford.edu

Phone

650-498-6012

URL

http://genome-www5.stanford.edu/

Department

Stanford University, School of Medicine

Street address

300 Pasteur Drive

City

Stanford

State/province

CA

ZIP/Postal code

94305

Country

USA

Platform ID

Series (2)

GSE44	Antibody Arrays Figure 7
GSE50	Antibody Array Figures

Data table header descriptions
ID_REF
CH1B_MEAN	mean channel 1 background
CH1B_MEDIAN	median channel 1 background
CH1D_MEAN	difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN	mean channel 2 signal
CH2D_MEAN	difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN	mean of channel 2 background
CH2B_MEDIAN	median of channel 2 background
CH2BN_MEDIAN	normalized CH2B_MEDIAN
CH2DN_MEAN	normalized CH2D_MEAN
CH2IN_MEAN	normalized CH2I_MEAN
CORR	simple correlation coefficient of channel 1 and channel 2 pixels
FLAG	user defined flag (default=0)
VALUE	same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD	standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD	standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN	ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN	ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN	ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN	ratio of CH2DN_MEAN and CH1DN_MEAN
REGR	slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX	total number of background pixels
TOT_SPIX	total number of signal (spot) pixels
TOP	vertical, short-axis spot ellipse minimum pixel coordinate
BOT	vertical, short-axis spot ellipse maximum pixel coordinate
LEFT	horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT	horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE	aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF	CH1B_MEAN	CH1B_MEDIAN	CH1D_MEAN	CH2I_MEAN	CH2D_MEAN	CH2B_MEAN	CH2B_MEDIAN	CH2BN_MEDIAN	CH2DN_MEAN	CH2IN_MEAN	CORR	FLAG	VALUE	PIX_RAT2_MEDIAN	PERGTBCH1I_1SD	PERGTBCH2I_1SD	RAT1_MEAN	RAT1N_MEAN	RAT2_MEAN	RAT2N_MEAN	REGR	TOT_BPIX	TOT_SPIX	TOP	BOT	LEFT	RIGHT	UNF_VALUE
1	79	77	125	1372	1277	97	95	24	329	354	.47	0	1.396	8.893	94	100	.098	.38	10.216	2.633	3.582	420	52	110	119	126	135	1.396
2	81	80	47	229	121	108	108	28	31	59	.41	0	-.592	2.13	78	84	.388	1.507	2.574	.663	.916	340	52	112	120	164	172	-.592
3	87	85	246	5412	5302	111	110	28	1366	1395	.8	0	2.473	20.26	100	100	.046	.18	21.553	5.554	16.103	420	52	111	120	202	211	2.473
4	104	89	58	153	33	125	120	31	9	39	.34	0	-2.77	.714	1	15	1.758	6.821	.569	.147	.352	656	80	110	121	238	249	-2.77
5	98	93	52	147	19	133	128	33	5	38	.04	0	-3.409	.927	42	17	2.737	10.621	.365	.094	.069	656	80	110	121	276	287	-3.409
6	112	96	44	165	3	170	162	42	1	43	0	0	-5.831	.817	0	2	14.667	56.917	.068	.018		656	80	110	121	314	325	-5.831
7	98	96	79	315	158	159	157	40	41	81	.53	0	-.956	2	92	100	.5	1.94	2	.515	.873	420	52	112	121	352	361	-.956
8	95	92	56	149	1	151	148	38	0	38		0	-7.764	.714	71	16	56	217.319	.018	.005		560	80	112	122	389	399	-7.764
9	144	100	74	157	11	151	146	38	3	40	.05	0	-4.706	.503	0	18	6.727	26.107	.149	.038	.02	560	80	112	122	427	437	-4.706
10	91	89	33	154	17	144	137	35	4	40	.13	0	-2.913	.915	52	3	1.941	7.533	.515	.133	.153	560	80	112	122	464	474	-2.913
11	82	79	28	110	6	107	104	27	2	28		-100		1	47	15	4.667	18.11	.214	.055		1272	156	144	159	123	138	-4.179
12	87	81	12	103		108	104	27	0	27		-100		1.111	1	16						1272	156	145	160	161	176
13	83	82	443	9673	9564	121	109	28	2465	2493	.84	0	2.476	20.443	96	100	.046	.18	21.589	5.563	16.087	420	52	148	157	203	212	2.476
14	103	85	178	8298	8167	139	131	34	2105	2138	.78	0	3.564	48.882	44	100	.022	.085	45.882	11.823	31.929	420	52	150	159	240	249	3.564
15	95	92	305	2247	2110	144	137	35	544	579	.8	0	.834	6.996	94	100	.145	.561	6.918	1.783	5.272	340	52	150	158	279	287	.834
16	119	93	334	374	223	158	151	39	57	96	.65	0	-2.539	.574	82	83	1.498	5.812	.668	.172	.421	656	80	148	159	313	324	-2.539
17	95	92	420	1163	1021	144	142	37	263	300	.73	0	-.675	2.111	96	100	.411	1.596	2.431	.626	1.964	420	52	150	159	352	361	-.675
18	98	95	37	140		146	143	37	-1	36	0	0		1.073	49	11						820	120	148	160	389	401
19	105	97	94	491	358	140	133	34	92	127	.44	0	-.027	3.526	37	91	.263	1.019	3.809	.981	1.408	560	80	150	160	427	437	-.027
20	99	94	22	169	6	172	163	42	2	44		-100		1.75	26	17	3.667	14.229	.273	.07		1272	156	147	162	462	477	-3.831

Total number of rows: 1440

Table truncated, full table size 154 Kbytes.

Supplementary data files not provided

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