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Sample GSM1694 Query DataSets for GSM1694
Status Public on Jun 27, 2002
Title Antigen array, 100X serum-134
Sample type protein
 
Channel 1
Source name Reference antibodies
Organism Homo sapiens
Extracted molecule protein
 
Channel 2
Source name Test antibodies, mix #5
Organism Homo sapiens
Extracted molecule protein
 
 
Description Category: Protein array
Subcategory: Antigen
Scanning Software: GenePix
Software version: 2.0.1.16
Lot batch = 14cl34
 
Submission date May 23, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL172
Series (2)
GSE44 Antibody Arrays Figure 7
GSE50 Antibody Array Figures

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 101 98 111 323 140 187 183 53 41 93 .56 0 -1.454 .989 81 57 .793 2.739 1.261 .365 1.109 656 80 178 189 90 101 -1.454
2 118 109 66 201 13 193 188 54 4 58 .14 0 -4.132 .521 7 16 5.077 17.539 .197 .057 .165 656 80 178 189 127 138 -4.132
3 102 100 345 228 47 182 181 52 14 66 .32 0 -4.664 .151 100 44 7.34 25.358 .136 .039 .095 340 52 179 187 168 176 -4.664
4 96 94 107 573 410 168 163 47 119 166 .68 0 .149 3.468 94 100 .261 .902 3.832 1.109 2.42 340 52 179 187 206 214 .149
5 101 99 46 278 129 151 149 43 37 80 .6 0 -.301 2.362 57 63 .357 1.232 2.804 .812 1.398 560 80 177 187 243 253 -.301
6 98 96 55 142 145 144 42 -1 41 0 0 .483 75 20 560 80 177 187 281 291
7 104 99 106 199 56 145 143 41 16 58 .32 0 -2.709 .745 98 65 1.893 6.539 .528 .153 .281 420 52 176 185 318 327 -2.709
8 100 98 765 503 366 141 137 40 106 146 .16 0 -2.852 4 94 100 2.09 7.221 .478 .138 .015 340 52 177 185 357 365 -2.852
9 96 94 78 129 132 130 38 0 37 .09 0 .314 71 16 .068 656 80 174 185 392 403
10 97 96 54 2544 2412 132 132 38 698 736 .5 0 3.693 38.087 73 100 .022 .077 44.667 12.93 17.407 340 52 176 184 432 440 3.693
11 134 110 210 262 72 202 190 55 21 76 .46 -100 .727 10 13 2.917 10.076 .343 .099 .087 1272 156 210 225 98 113 -3.333
12 104 102 38 186 7 181 179 52 2 54 0 0 -4.229 .953 56 25 5.429 18.754 .184 .053 656 80 215 226 130 141 -4.229
13 102 99 778 592 434 160 158 46 126 171 .76 0 -2.631 .427 100 98 1.793 6.193 .558 .161 .545 420 52 216 225 168 177 -2.631
14 109 101 211 722 577 148 145 42 167 209 .78 0 -.337 2.608 82 88 .366 1.263 2.735 .792 2.106 560 80 215 225 207 217 -.337
15 127 106 185 269 122 150 147 43 35 78 .69 0 -2.389 .649 45 68 1.516 5.239 .659 .191 .502 820 120 214 226 244 256 -2.389
16 115 105 304 5557 5422 157 135 39 1569 1609 .88 0 2.368 15.011 65 79 .056 .194 17.836 5.163 15.17 820 120 214 226 280 292 2.368
17 97 94 765 4771 4644 127 127 37 1344 1381 .88 0 .813 6.583 100 100 .165 .569 6.071 1.757 4.927 340 52 215 223 320 328 .813
18 101 100 44 1199 1058 144 141 41 306 347 .5 0 2.799 25.714 63 100 .042 .144 24.045 6.96 8.168 340 52 215 223 358 366 2.799
19 103 102 151 662 525 140 137 40 152 192 .63 0 .009 2.992 98 100 .288 .994 3.477 1.006 2.365 340 52 214 222 395 403 .009
20 100 98 23 133 6 130 127 37 2 38 -100 .906 42 19 3.833 13.243 .261 .076 1272 156 209 224 427 442 -3.727

Total number of rows: 1440

Table truncated, full table size 156 Kbytes.




Supplementary data files not provided
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