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Sample GSM1696

Query DataSets for GSM1696

Status

Public on Jun 27, 2002

Title

Antigen array, 100X serum-136

Sample type

protein

Channel 1

Source name

Reference antibodies

Organism

Extracted molecule

protein

Channel 2

Source name

Test antibodies, mix #3

Organism

Extracted molecule

protein

Description

Category: Protein array
Subcategory: Antigen
Scanning Software: GenePix
Software version: 2.0.1.16
Lot batch = 14cl36

Submission date

May 23, 2002

Last update date

Nov 21, 2005

Organization

Stanford Microarray Database (SMD)

E-mail(s)

array@genome.stanford.edu

Phone

650-498-6012

URL

http://genome-www5.stanford.edu/

Department

Stanford University, School of Medicine

Street address

300 Pasteur Drive

City

Stanford

State/province

CA

ZIP/Postal code

94305

Country

USA

Platform ID

Series (2)

GSE44	Antibody Arrays Figure 7
GSE50	Antibody Array Figures

Data table header descriptions
ID_REF
CH1B_MEAN	mean channel 1 background
CH1B_MEDIAN	median channel 1 background
CH1D_MEAN	difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN	mean channel 2 signal
CH2D_MEAN	difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN	mean of channel 2 background
CH2B_MEDIAN	median of channel 2 background
CH2BN_MEDIAN	normalized CH2B_MEDIAN
CH2DN_MEAN	normalized CH2D_MEAN
CH2IN_MEAN	normalized CH2I_MEAN
CORR	simple correlation coefficient of channel 1 and channel 2 pixels
FLAG	user defined flag (default=0)
VALUE	same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD	standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD	standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN	ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN	ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN	ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN	ratio of CH2DN_MEAN and CH1DN_MEAN
REGR	slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX	total number of background pixels
TOT_SPIX	total number of signal (spot) pixels
TOP	vertical, short-axis spot ellipse minimum pixel coordinate
BOT	vertical, short-axis spot ellipse maximum pixel coordinate
LEFT	horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT	horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE	aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF	CH1B_MEAN	CH1B_MEDIAN	CH1D_MEAN	CH2I_MEAN	CH2D_MEAN	CH2B_MEAN	CH2B_MEDIAN	CH2BN_MEDIAN	CH2DN_MEAN	CH2IN_MEAN	CORR	FLAG	VALUE	PIX_RAT2_MEDIAN	PERGTBCH1I_1SD	PERGTBCH2I_1SD	RAT1_MEAN	RAT1N_MEAN	RAT2_MEAN	RAT2N_MEAN	REGR	TOT_BPIX	TOT_SPIX	TOP	BOT	LEFT	RIGHT	UNF_VALUE
1	171	169	209	241	76	168	165	60	27	87	.41	0	-2.926	.269	100	53	2.75	7.601	.364	.132	.311	340	52	150	158	167	175	-2.926
2	180	180	63	174		204	202	73	-10	63		0		1.5	47	7						560	80	148	158	205	215
3	140	126	513	1036	873	161	163	59	316	375	.81	0	-.7	1.809	100	98	.588	1.624	1.702	.616	1.479	420	52	150	159	243	252	-.7
4	118	117	71	181	18	164	163	59	7	65	.05	0	-3.446	.84	66	28	3.944	10.902	.254	.092	.042	560	80	149	159	280	290	-3.446
5	123	121	54	177	19	161	158	57	7	64	.21	0	-2.974	.568	56	26	2.842	7.855	.352	.127	.18	560	80	150	160	318	328	-2.974
6	147	120	63	143	4	140	139	50	1	52	0	0	-5.444	.5	0	15	15.75	43.53	.063	.023	.012	560	80	151	161	355	365	-5.444
7	118	113	56	125		133	129	47	-1	45		0		.719	63	10						560	80	152	162	391	401
8	119	114	56	4826	4680	743	146	53	1693	1746	.57	0	4.918	56.145	56	73	.012	.033	83.571	30.238	38.378	656	80	152	163	430	441	4.918
9	112	109	123	526	402	126	124	45	145	190	.75	0	.242	3.39	94	100	.306	.846	3.268	1.183	2.059	340	52	155	163	469	477	.242
10	134	100	53	245	130	119	115	42	47	89	.38	0	-.172	2.602	0	88	.408	1.127	2.453	.887	.665	340	52	156	164	505	513	-.172
11	170	165	87	182	9	176	173	63	3	66	.1	0	-4.74	.653	65	27	9.667	26.717	.103	.037	.07	560	80	185	195	167	177	-4.74
12	174	171	61	164		194	189	68	-9	59		0		1.235	53	11						560	80	186	196	205	215
13	140	132	733	1270	1105	170	165	60	400	460	.84	0	-.875	1.531	100	100	.663	1.833	1.508	.545	1.163	420	52	188	197	243	252	-.875
14	124	118	419	402	254	151	148	54	92	145	.7	0	-2.189	.603	100	96	1.65	4.559	.606	.219	.466	340	52	189	197	282	290	-2.189
15	123	122	393	224	80	148	144	52	29	81	.65	0	-3.763	.218	100	71	4.913	13.577	.204	.074	.2	340	52	189	197	319	327	-3.763
16	120	115	765	4546	4396	161	150	54	1591	1645	.88	0	1.056	5.336	100	100	.174	.481	5.746	2.079	4.657	420	52	190	199	356	365	1.056
17	114	112	1016	1633	1499	140	134	48	542	591	.83	0	-.906	1.564	100	100	.678	1.873	1.475	.534	1.18	340	52	191	199	394	402	-.906
18	117	109	48	318	170	152	148	54	62	115	.44	0	.358	3.354	12	62	.282	.78	3.542	1.281	1.166	560	80	190	200	429	439	.358
19	118	113	139	188	58	132	130	47	21	68	.45	0	-2.728	.513	80	62	2.397	6.624	.417	.151	.277	656	80	190	201	465	476	-2.728
20	112	108	6	108		121	118	43	-4	39		0		1.25	17	8						1272	156	188	203	501	516

Total number of rows: 1440

Table truncated, full table size 149 Kbytes.

Supplementary data files not provided

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