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Sample GSM1697

Query DataSets for GSM1697

Status

Public on Jun 27, 2002

Title

Antigen array, 100X serum-137

Sample type

protein

Channel 1

Source name

Reference antibodies

Organism

Extracted molecule

protein

Channel 2

Source name

Test antibodies, mix #2

Organism

Extracted molecule

protein

Description

Category: Protein array
Subcategory: Antigen
Scanning Software: GenePix
Software version: 2.0.1.16
Lot batch = 14cl37

Submission date

May 23, 2002

Last update date

Nov 21, 2005

Organization

Stanford Microarray Database (SMD)

E-mail(s)

array@genome.stanford.edu

Phone

650-498-6012

URL

http://genome-www5.stanford.edu/

Department

Stanford University, School of Medicine

Street address

300 Pasteur Drive

City

Stanford

State/province

CA

ZIP/Postal code

94305

Country

USA

Platform ID

Series (2)

GSE44	Antibody Arrays Figure 7
GSE50	Antibody Array Figures

Data table header descriptions
ID_REF
CH1B_MEAN	mean channel 1 background
CH1B_MEDIAN	median channel 1 background
CH1D_MEAN	difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN	mean channel 2 signal
CH2D_MEAN	difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN	mean of channel 2 background
CH2B_MEDIAN	median of channel 2 background
CH2BN_MEDIAN	normalized CH2B_MEDIAN
CH2DN_MEAN	normalized CH2D_MEAN
CH2IN_MEAN	normalized CH2I_MEAN
CORR	simple correlation coefficient of channel 1 and channel 2 pixels
FLAG	user defined flag (default=0)
VALUE	same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD	standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD	standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN	ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN	ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN	ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN	ratio of CH2DN_MEAN and CH1DN_MEAN
REGR	slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX	total number of background pixels
TOT_SPIX	total number of signal (spot) pixels
TOP	vertical, short-axis spot ellipse minimum pixel coordinate
BOT	vertical, short-axis spot ellipse maximum pixel coordinate
LEFT	horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT	horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE	aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF	CH1B_MEAN	CH1B_MEDIAN	CH1D_MEAN	CH2I_MEAN	CH2D_MEAN	CH2B_MEAN	CH2B_MEDIAN	CH2BN_MEDIAN	CH2DN_MEAN	CH2IN_MEAN	CORR	FLAG	VALUE	PIX_RAT2_MEDIAN	PERGTBCH1I_1SD	PERGTBCH2I_1SD	RAT1_MEAN	RAT1N_MEAN	RAT2_MEAN	RAT2N_MEAN	REGR	TOT_BPIX	TOT_SPIX	TOP	BOT	LEFT	RIGHT	UNF_VALUE
1	84	83	111	358	262	99	96	30	81	111	.63	0	-.446	1.722	96	100	.424	1.362	2.36	.734	1.831	420	52	186	195	164	173	-.446
2	88	85	61	128	30	100	98	30	9	40	.19	0	-2.709	.719	88	51	2.033	6.538	.492	.153	.162	340	52	188	196	203	211	-2.709
3	89	87	145	891	793	101	98	30	247	277	.78	0	.766	5.345	100	100	.183	.588	5.469	1.701	4.152	420	52	187	196	239	248	.766
4	94	92	88	116	20	99	96	30	6	36	.13	0	-3.823	.366	94	36	4.4	14.148	.227	.071	.075	340	52	189	197	277	285	-3.823
5	89	88	128	477	375	103	102	32	117	148	.31	0	-.134	4.169	94	100	.341	1.098	2.93	.911	.445	340	52	189	197	315	323	-.134
6	88	86	52	96		107	105	33	-3	30		0		.333	73	8						656	80	187	198	351	362
7	89	87	79	103		106	105	33	-1	32		0		.224	82	12						656	80	188	199	389	400
8	94	92	47	127	21	112	106	33	7	39	.21	0	-2.847	.645	65	31	2.238	7.197	.447	.139	.192	656	80	189	200	426	437	-2.847
9	92	88	72	499	405	98	94	29	126	155	.63	0	.807	5.5	90	100	.178	.572	5.625	1.749	2.772	340	52	192	200	467	475	.807
10	99	95	83	264	142	126	122	38	44	82	.15	0	-.91	2.082	75	92	.585	1.88	1.711	.532	.112	340	52	193	201	504	512	-.91
11	79	76	47	105	8	99	97	30	2	33	.11	0	-4.24	.682	73	20	5.875	18.891	.17	.053	.132	656	80	222	233	162	173	-4.24
12	87	84	28	85		102	98	30	-4	26		0		.882	51	2						656	80	223	234	200	211
13	90	88	199	914	819	100	95	30	255	284	.86	0	.356	4.013	96	96	.243	.781	4.116	1.28	3.489	560	80	223	233	239	249	.356
14	91	87	167	1140	1041	103	99	31	324	355	.72	0	.955	5.742	90	100	.16	.516	6.234	1.939	3.894	420	52	226	235	276	285	.955
15	91	89	150	299	197	105	102	32	61	93	.77	0	-1.292	1.256	98	96	.761	2.448	1.313	.408	.998	340	52	226	234	315	323	-1.292
16	89	85	221	166	61	109	105	33	19	52	.47	0	-3.542	.392	100	63	3.623	11.65	.276	.086	.219	420	52	226	235	352	361	-3.542
17	88	85	182	4416	4305	112	111	35	1339	1373	.74	0	2.879	20.288	88	100	.042	.136	23.654	7.356	14.393	340	52	228	236	391	399	2.879
18	93	88	32	130	21	112	109	34	7	40	.08	0	-2.293	1.44	37	33	1.524	4.9	.656	.204	.084	656	80	226	237	425	436	-2.293
19	94	91	94	370	262	112	108	34	81	115	.56	0	-.206	2.927	92	98	.359	1.154	2.787	.867	1.631	420	52	227	236	465	474	-.206
20	97	95	36	108		112	110	34	-1	34		0		.939	56	18						656	80	227	238	501	512

Total number of rows: 1440

Table truncated, full table size 152 Kbytes.

Supplementary data files not provided

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