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Sample GSM1698

Query DataSets for GSM1698

Status

Public on Jun 27, 2002

Title

Antigen array, 100X serum-138

Sample type

protein

Channel 1

Source name

Reference antibodies

Organism

Extracted molecule

protein

Channel 2

Source name

Test antibodies, mix #1

Organism

Extracted molecule

protein

Description

Category: Protein array
Subcategory: Antigen
Scanning Software: GenePix
Software version: 2.0.1.16
Lot batch = 14cl38

Submission date

May 23, 2002

Last update date

Nov 21, 2005

Organization

Stanford Microarray Database (SMD)

E-mail(s)

array@genome.stanford.edu

Phone

650-498-6012

URL

http://genome-www5.stanford.edu/

Department

Stanford University, School of Medicine

Street address

300 Pasteur Drive

City

Stanford

State/province

CA

ZIP/Postal code

94305

Country

USA

Platform ID

Series (2)

GSE44	Antibody Arrays Figure 7
GSE50	Antibody Array Figures

Data table header descriptions
ID_REF
CH1B_MEAN	mean channel 1 background
CH1B_MEDIAN	median channel 1 background
CH1D_MEAN	difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN	mean channel 2 signal
CH2D_MEAN	difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN	mean of channel 2 background
CH2B_MEDIAN	median of channel 2 background
CH2BN_MEDIAN	normalized CH2B_MEDIAN
CH2DN_MEAN	normalized CH2D_MEAN
CH2IN_MEAN	normalized CH2I_MEAN
CORR	simple correlation coefficient of channel 1 and channel 2 pixels
FLAG	user defined flag (default=0)
VALUE	same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD	standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD	standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN	ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN	ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN	ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN	ratio of CH2DN_MEAN and CH1DN_MEAN
REGR	slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX	total number of background pixels
TOT_SPIX	total number of signal (spot) pixels
TOP	vertical, short-axis spot ellipse minimum pixel coordinate
BOT	vertical, short-axis spot ellipse maximum pixel coordinate
LEFT	horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT	horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE	aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF	CH1B_MEAN	CH1B_MEDIAN	CH1D_MEAN	CH2I_MEAN	CH2D_MEAN	CH2B_MEAN	CH2B_MEDIAN	CH2BN_MEDIAN	CH2DN_MEAN	CH2IN_MEAN	CORR	FLAG	VALUE	PIX_RAT2_MEDIAN	PERGTBCH1I_1SD	PERGTBCH2I_1SD	RAT1_MEAN	RAT1N_MEAN	RAT2_MEAN	RAT2N_MEAN	REGR	TOT_BPIX	TOT_SPIX	TOP	BOT	LEFT	RIGHT	UNF_VALUE
1	94	92	107	152	34	120	118	33	9	42	.15	0	-3.494	.322	94	38	3.147	11.269	.318	.089	.163	340	52	197	205	132	140	-3.494
2	98	94	49	617	500	121	117	33	140	172	.57	0	1.511	8.231	69	100	.098	.351	10.204	2.85	4.364	340	52	198	206	170	178	1.511
3	93	90	432	292	171	125	121	34	48	82	.75	0	-3.177	.324	100	88	2.526	9.047	.396	.111	.367	420	52	196	205	206	215	-3.177
4	92	90	70	308	188	122	120	34	52	86	.6	0	-.415	2.808	86	100	.372	1.333	2.686	.75	1.3	340	52	198	206	245	253	-.415
5	94	91	35	129	8	123	121	34	2	36	.05	0	-3.97	.632	56	20	4.375	15.667	.229	.064	.05	656	80	194	205	281	292	-3.97
6	90	87	36	102		126	125	35	-6	28		0		.238	62	3						656	80	194	205	318	329
7	86	83	75	525	397	129	128	36	111	147	.63	0	.564	5.406	92	100	.189	.677	5.293	1.478	2.501	420	52	197	206	356	365	.564
8	90	86	61	172	11	163	161	45	3	48	.1	0	-4.312	.509	52	20	5.545	19.858	.18	.05	.111	656	80	194	205	393	404	-4.312
9	84	83	53	148		154	151	42	-1	41	.09	0		.727	70	15					.091	656	80	194	205	430	441
10	84	82	45	4013	3855	181	158	44	1077	1121	.41	0	4.58	51.033	75	100	.012	.042	85.667	23.923	25.108	420	52	197	206	468	477	4.58
11	92	91	37	115		123	120	34	-1	32		0		.737	56	13						656	80	231	242	131	142
12	92	90	25	110		122	119	33	-3	31		0		1	47	13						656	80	231	242	167	178
13	513	94	691	288	160	337	128	36	45	80	.44	0	-3.951	.21	0	0	4.319	15.465	.232	.065	1.861	420	52	234	243	206	215	-3.951
14	98	96	345	149	18	132	131	37	5	42	.25	0	-6.101	.114	100	30	19.167	68.635	.052	.015	.047	340	52	235	243	245	253	-6.101
15	92	89	254	4982	4868	121	114	32	1359	1391	.87	0	2.42	17.095	94	100	.052	.187	19.165	5.352	15.967	340	52	235	243	283	291	2.42
16	92	90	671	215	93	122	122	34	26	60	.64	0	-4.691	.154	100	88	7.215	25.837	.139	.039	.13	420	52	234	243	318	327	-4.691
17	90	87	632	176	50	129	126	35	14	49	.53	0	-5.5	.099	100	67	12.64	45.263	.079	.022	.08	340	52	234	242	357	365	-5.5
18	87	84	28	131		142	139	39	-2	37		0		.719	53	6						656	80	232	243	392	403
19	92	89	97	842	699	148	143	40	195	235	.5	0	1.009	5.739	78	96	.139	.497	7.206	2.012	3.913	340	52	235	243	432	440	1.009
20	89	86	30	133		160	156	44	-6	37		0		1.304	56	3						656	80	232	243	467	478

Total number of rows: 1440

Table truncated, full table size 149 Kbytes.

Supplementary data files not provided

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