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Sample GSM1700917 Query DataSets for GSM1700917
Status Public on Aug 10, 2016
Title bgcn mutant small RNA-Seq
Sample type SRA
Source name testis
Organism Drosophila melanogaster
Characteristics cell type: early mitotically dividing germline cells (gonioblasts)
Extracted molecule total RNA
Extraction protocol RNA extraction from hand dissected testes
True-seq small RNA library construction
Library strategy ncRNA-Seq
Library source transcriptomic
Library selection size fractionation
Instrument model Illumina HiSeq 2000
Description whole testis was used for RNA -extraction
Data processing bad quality read removal -Fastq toolkit
Alignment to genome - Bowtie (v1)
Libarray Normalization - RLE method (DESeq2)
Obtaining normalized read data - DEseq2
Genome_build: Drosophila melanogaster rel 5.25
Supplementary_files_format_and_content: cluster and transposon mapping piRNAs
Submission date Jun 01, 2015
Last update date May 15, 2019
Contact name Toshie Kai
Organization name Temasek Life Sciences Laboratory
Street address 1 Research Link, National University of Singapore
City Singapore
ZIP/Postal code 117604
Country Singapore
Platform ID GPL13304
Series (1)
GSE69417 Developmental regulation of piRNAs during spermatogenesis in Drosophila melanogaster
BioSample SAMN03754039
SRA SRX1044738

Supplementary file Size Download File type/resource
GSM1700917_bgcn_testis.xlsx 60.4 Kb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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