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Sample GSM1701

Query DataSets for GSM1701

Status

Public on Jun 27, 2002

Title

Antigen array, 10X serum-141

Sample type

protein

Channel 1

Source name

Reference antibodies

Organism

Extracted molecule

protein

Channel 2

Source name

Test antibodies, mix #4

Organism

Extracted molecule

protein

Description

Category: Protein array
Subcategory: Antigen
Scanning Software: GenePix
Software version: 2.0.1.16
Lot batch = 14cl41

Submission date

May 23, 2002

Last update date

Nov 21, 2005

Organization

Stanford Microarray Database (SMD)

E-mail(s)

array@genome.stanford.edu

Phone

650-498-6012

URL

http://genome-www5.stanford.edu/

Department

Stanford University, School of Medicine

Street address

300 Pasteur Drive

City

Stanford

State/province

CA

ZIP/Postal code

94305

Country

USA

Platform ID

Series (2)

GSE45	Antibody Arrays Figures 2, 4 and 6
GSE50	Antibody Array Figures

Data table header descriptions
ID_REF
CH1B_MEAN	mean channel 1 background
CH1B_MEDIAN	median channel 1 background
CH1D_MEAN	difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN	mean channel 2 signal
CH2D_MEAN	difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN	mean of channel 2 background
CH2B_MEDIAN	median of channel 2 background
CH2BN_MEDIAN	normalized CH2B_MEDIAN
CH2DN_MEAN	normalized CH2D_MEAN
CH2IN_MEAN	normalized CH2I_MEAN
CORR	simple correlation coefficient of channel 1 and channel 2 pixels
FLAG	user defined flag (default=0)
VALUE	same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD	standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD	standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN	ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN	ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN	ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN	ratio of CH2DN_MEAN and CH1DN_MEAN
REGR	slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX	total number of background pixels
TOT_SPIX	total number of signal (spot) pixels
TOP	vertical, short-axis spot ellipse minimum pixel coordinate
BOT	vertical, short-axis spot ellipse maximum pixel coordinate
LEFT	horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT	horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE	aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF	CH1B_MEAN	CH1B_MEDIAN	CH1D_MEAN	CH2I_MEAN	CH2D_MEAN	CH2B_MEAN	CH2B_MEDIAN	CH2BN_MEDIAN	CH2DN_MEAN	CH2IN_MEAN	CORR	FLAG	VALUE	PIX_RAT2_MEDIAN	PERGTBCH1I_1SD	PERGTBCH2I_1SD	RAT1_MEAN	RAT1N_MEAN	RAT2_MEAN	RAT2N_MEAN	REGR	TOT_BPIX	TOT_SPIX	TOP	BOT	LEFT	RIGHT	UNF_VALUE
1	64	62	245	147	47	100	100	69	32	101	.52	0	-2.918	.207	100	67	5.213	7.556	.192	.132	.186	420	52	117	126	137	146	-2.918
2	66	64	47	99		104	101	70	-1	68		0		.356	63	10						656	80	116	127	174	185
3	68	66	1274	134	24	112	110	76	17	92	.32	0	-6.266	.033	100	40	53.083	76.941	.019	.013	.017	420	52	119	128	213	222	-6.266
4	67	66	224	129	21	111	108	75	14	89	.3	0	-3.951	.138	100	48	10.667	15.461	.094	.065	.078	340	52	121	129	252	260	-3.951
5	71	69	46	106	5	106	101	70	3	73	.16	0	-3.737	.667	55	20	9.2	13.335	.109	.075	.116	820	120	119	131	288	300	-3.737
6	73	70	13	102		117	110	76	-6	70	.1	-100		1.455	23	6					.094	1272	156	117	132	322	337
7	80	70	24	134	15	123	119	82	10	92	.2	-100		.961	0	22	1.6	2.319	.625	.431	.275	1272	156	118	133	359	374	-1.214
8	79	78	58	2571	2454	130	117	81	1693	1774	.04	0	4.867	34.767	78	100	.024	.034	42.31	29.191	.175	420	52	123	132	401	410	4.867
9	226	74	230	122	8	181	114	79	6	84	.08	0	-5.381	.095	0	0	28.75	41.671	.035	.024	.063	420	52	124	133	438	447	-5.381
10	85	77	45	142	45	100	97	67	31	98	.37	0	-.535	1.074	7	73	1	1.449	1	.69	.405	340	52	126	134	476	484	-.535
11	71	64	26	109	13	98	96	66	9	75	.09	0	-1.535	.852	0	30	2	2.899	.5	.345	.108	820	120	152	164	136	148	-1.535
12	66	65	9	105	5	102	100	69	3	72	0	-100		1.5	10	17	1.8	2.609	.556	.383		1272	156	151	166	172	187	-1.383
13	69	66	1494	145	45	102	100	69	31	100	.54	0	-5.589	.033	100	60	33.2	48.121	.03	.021	.03	560	80	155	165	213	223	-5.589
14	67	66	1122	292	195	98	97	67	135	201	.78	0	-3.06	.179	100	100	5.754	8.34	.174	.12	.131	340	52	158	166	251	259	-3.06
15	79	71	1025	128	38	95	90	62	26	88	.2	0	-5.289	.044	100	40	26.974	39.097	.037	.026	.023	420	52	157	166	289	298	-5.289
16	78	74	2466	1775	1672	105	103	71	1154	1225	.88	0	-1.096	.717	100	100	1.475	2.138	.678	.468	.64	420	52	158	167	325	334	-1.096
17	74	72	2731	786	680	110	106	73	469	542	.81	0	-2.541	.26	100	100	4.016	5.821	.249	.172	.206	340	52	160	168	364	372	-2.541
18	81	77	52	202	91	114	111	77	63	139	.71	0	.272	2	49	56	.571	.828	1.75	1.207	1.295	820	120	159	171	398	410	.272
19	80	79	380	178	60	118	118	81	41	123	.44	0	-3.198	.218	100	82	6.333	9.18	.158	.109	.073	420	52	160	169	437	446	-3.198
20	77	75	7	109	14	96	95	66	10	75	.22	-100		1.421	25	26	.5	.725	2	1.38	.304	1272	156	158	173	471	486	.465

Total number of rows: 1440

Table truncated, full table size 156 Kbytes.

Supplementary data files not provided

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