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Sample GSM1703 Query DataSets for GSM1703
Status Public on Jun 27, 2002
Title 110 antigens in 10X FCS,mix#X,12-22-99
Sample type protein
 
Channel 1
Source name reference antigens
Organism Homo sapiens
Extracted molecule protein
 
Channel 2
Source name test antigens
Organism Homo sapiens
Extracted molecule protein
 
 
Description Category: Protein array
Subcategory: Antibody
Scanning Software: ScanAlyze
Software version: 2.33
Lot batch = 11cl46
 
Submission date May 23, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL171
Series (2)
GSE46 Antibody Arrays Figure 6 10X FCS
GSE50 Antibody Array Figures

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log10 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 545 533 403 406 72 340 334 164 35 199 .369 0 -3.515 .252 59 16 5.597 11.433 .179 .087 .107 1544 137 212 225 179 192 -3.515
2 659 522 411 403 80 343 323 158 39 197 .355 0 -3.391 .214 61 18 5.138 10.494 .195 .095 .105 1544 137 215 228 224 237 -3.391
3 804 521 553 411 97 322 314 154 47 201 .211 0 -3.542 .203 57 29 5.701 11.645 .175 .086 .021 1544 137 214 227 264 277 -3.542
4 719 534 410 580 246 434 334 164 120 284 .688 0 -1.767 .572 55 62 1.667 3.404 .6 .294 .316 1544 137 214 227 301 314 -1.767
5 496 485 392 563 225 341 338 165 110 276 .63 0 -1.831 .56 51 52 1.742 3.559 .574 .281 .351 1544 137 213 226 341 354 -1.831
6 941 485 534 549 218 338 331 162 107 269 .255 0 -2.323 .528 57 52 2.45 5.003 .408 .2 .049 1544 137 213 226 381 394 -2.323
7 466 455 292 350 19 333 331 162 9 171 .165 0 -4.972 .165 50 8 15.368 31.391 .065 .032 .043 1544 137 212 225 422 435 -4.972
8 468 460 625 378 55 330 323 158 27 185 .017 0 -4.537 .17 51 6 11.364 23.211 .088 .043 .004 1544 137 212 225 462 475 -4.537
9 466 457 243 335 18 322 317 155 9 164 .224 0 -4.785 .219 49 4 13.5 27.574 .074 .036 .064 1544 137 211 224 502 515 -4.785
10 568 554 226 371 28 348 343 168 14 182 .222 0 -4.043 .253 44 8 8.071 16.486 .124 .061 .081 1544 137 251 264 180 193 -4.043
11 551 545 225 327 14 318 313 153 7 160 .239 0 -5.037 .225 40 6 16.071 32.826 .062 .03 .082 1544 137 251 264 220 233 -5.037
12 1210 644 230 362 26 343 336 165 13 177 0 -4.175 .221 34 7 8.846 18.069 .113 .055 1544 137 254 267 261 274 -4.175
13 803 598 393 671 304 377 367 180 149 329 .343 0 -1.401 .636 56 59 1.293 2.641 .774 .379 .275 1544 137 254 267 301 314 -1.401
14 542 512 501 778 433 362 345 169 212 381 .763 0 -1.241 .846 62 67 1.157 2.363 .864 .423 .613 1544 137 253 266 341 354 -1.241
15 541 506 485 790 442 363 348 170 216 387 .64 0 -1.164 .875 56 65 1.097 2.241 .911 .446 .491 1544 137 253 266 382 395 -1.164
16 512 475 220 340 7 340 333 163 3 166 0 -6.004 .204 43 1 31.429 64.194 .032 .016 1544 137 252 265 422 435 -6.004
17 533 474 241 347 18 336 329 161 9 170 0 -4.773 .156 49 0 13.389 27.347 .075 .037 1544 137 252 265 463 476 -4.773
18 905 483 142 324 465 338 165 -7 159 0 .322 28 0 1544 137 251 264 503 516
19 586 572 157 334 343 339 166 -2 164 0 .182 27 2 1544 137 291 304 180 193
20 598 561 177 320 335 332 163 -6 157 0 .241 33 2 1544 137 291 304 221 234

Total number of rows: 1152

Table truncated, full table size 124 Kbytes.




Supplementary data files not provided
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