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Sample GSM1705 Query DataSets for GSM1705
Status Public on Jun 27, 2002
Title 110 antigens in 10X FCS,mix#3,12-22-99
Sample type protein
 
Channel 1
Source name reference antigens
Organism Homo sapiens
Extracted molecule protein
 
Channel 2
Source name test antigens
Organism Homo sapiens
Extracted molecule protein
 
 
Description Category: Protein array
Subcategory: Antibody
Scanning Software: ScanAlyze
Software version: 2.33
Lot batch = 11cl48
 
Submission date May 23, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL171
Series (2)
GSE46 Antibody Arrays Figure 6 10X FCS
GSE50 Antibody Array Figures

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log10 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 623 501 389 471 144 339 327 103 45 148 .527 0 -3.102 .373 62 37 2.701 8.586 .37 .116 .223 1544 137 191 204 204 217 -3.102
2 506 479 1423 736 381 378 355 112 120 232 .11 0 -3.569 .299 64 32 3.735 11.87 .268 .084 .059 1544 137 191 204 244 257 -3.569
3 436 401 363 430 107 335 323 102 34 135 .581 0 -3.431 .337 62 34 3.393 10.782 .295 .093 .234 1544 137 191 204 284 297 -3.431
4 654 440 223 357 36 347 321 101 11 112 .247 0 -4.299 .285 48 10 6.194 19.687 .161 .051 .099 1544 137 191 204 325 338 -4.299
5 626 410 305 349 51 311 298 94 16 110 .285 0 -4.248 .241 60 10 5.98 19.007 .167 .053 .189 1544 137 191 204 365 378 -4.248
6 403 370 656 362 65 302 297 93 20 114 .108 0 -5.003 .411 54 18 10.092 32.076 .099 .031 .005 1544 137 191 204 405 418 -5.003
7 445 346 159 340 58 302 282 89 18 107 .442 0 -3.123 .468 45 21 2.741 8.713 .365 .115 .244 1544 137 191 204 446 459 -3.123
8 342 331 171 303 36 272 267 84 11 95 .236 0 -3.916 .347 45 14 4.75 15.097 .211 .066 .103 1544 137 191 204 486 499 -3.916
9 350 336 165 285 46 244 239 75 14 90 .312 0 -3.511 .684 44 22 3.587 11.4 .279 .088 .17 1544 137 191 204 527 540 -3.511
10 523 470 110 373 50 365 323 102 16 117 .141 0 -2.806 .388 24 10 2.2 6.992 .455 .143 .071 1544 137 231 244 203 216 -2.806
11 461 435 131 353 26 330 327 103 8 111 .142 0 -4.001 .5 35 7 5.038 16.013 .198 .062 .06 1544 137 231 244 244 257 -4.001
12 445 427 111 378 54 361 324 102 17 119 .29 0 -2.708 .478 27 11 2.056 6.533 .486 .153 .132 1544 137 231 244 284 297 -2.708
13 449 420 249 3481 3175 513 306 96 999 1095 .51 0 2.004 10.88 58 81 .078 .249 12.751 4.012 4.727 1544 137 231 244 325 338 2.004
14 414 401 268 3469 3174 309 295 93 999 1091 .694 0 1.898 10.81 57 77 .084 .268 11.843 3.726 6.884 1544 137 231 244 365 378 1.898
15 397 388 297 4018 3718 311 300 94 1170 1264 .633 0 1.978 10.68 57 75 .08 .254 12.519 3.939 6.321 1544 137 231 244 405 418 1.978
16 389 357 141 364 80 291 284 89 25 115 .301 0 -2.486 .626 37 29 1.763 5.602 .567 .179 .167 1544 137 231 244 446 459 -2.486
17 350 338 303 403 122 285 281 88 38 127 .363 0 -2.981 .633 56 43 2.484 7.893 .403 .127 .123 1544 137 231 244 486 499 -2.981
18 354 343 150 332 61 272 271 85 19 104 .511 0 -2.966 .506 43 24 2.459 7.815 .407 .128 .278 1544 137 231 244 526 539 -2.966
19 569 516 282 366 52 335 314 99 16 115 .24 0 -4.107 .273 42 16 5.423 17.236 .184 .058 .057 1544 137 271 284 203 216 -4.107
20 435 420 104 327 21 311 306 96 7 103 .096 0 -3.976 .409 24 5 4.952 15.74 .202 .064 .037 1544 137 271 284 244 257 -3.976

Total number of rows: 1152

Table truncated, full table size 124 Kbytes.




Supplementary data files not provided
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