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Sample GSM1712 Query DataSets for GSM1712
Status Public on Jun 27, 2002
Title 110 antigens in 100X FCS,mix#4,12-22-99
Sample type protein
 
Channel 1
Source name reference antigens
Organism Homo sapiens
Extracted molecule protein
 
Channel 2
Source name test antigens
Organism Homo sapiens
Extracted molecule protein
 
 
Description Category: Protein array
Subcategory: Antibody
Scanning Software: ScanAlyze
Software version: 2.33
Lot batch = 11cl55
 
Submission date May 23, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL171
Series (2)
GSE47 Antibody Arrays Figure 6 100X FCS
GSE50 Antibody Array Figures

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 682 624 421 880 398 500 482 425 351 775 .07 0 -.264 1.506 40 62 1.058 1.201 .945 .833 .012 1544 137 298 311 147 160 -.264
2 780 596 462 872 403 498 469 413 355 768 .216 0 -.38 1.426 40 70 1.146 1.302 .872 .768 .05 1544 137 297 310 187 200 -.38
3 756 573 805 1028 555 546 473 417 489 905 0 0 -.72 1.795 49 67 1.45 1.647 .689 .607 0 1544 137 296 309 227 240 -.72
4 776 576 258 532 26 519 506 446 23 469 0 -3.494 .456 32 4 9.923 11.267 .101 .089 1544 137 295 308 268 281 -3.494
5 859 597 663 555 30 561 525 462 26 489 .528 0 -4.649 .47 29 3 22.1 25.092 .045 .04 .015 1544 137 294 307 308 321 -4.649
6 909 614 227 513 700 543 478 -26 452 0 .493 17 1 1544 137 293 306 348 361
7 862 597 130 570 19 694 551 485 17 502 0 -2.958 .49 19 2 6.842 7.769 .146 .129 1544 137 293 306 389 402 -2.958
8 804 628 100 612 6 734 606 534 5 539 0 -4.242 .646 14 1 16.667 18.923 .06 .053 1544 137 292 305 429 442 -4.242
9 766 630 109 611 4 652 607 535 4 538 .187 0 -4.951 .432 15 0 27.25 30.94 .037 .032 .107 1544 137 291 304 469 482 -4.951
10 788 671 193 655 109 575 546 481 96 577 .077 0 -1.007 .599 21 10 1.771 2.01 .565 .497 .033 1544 137 337 350 147 160 -1.007
11 1120 688 493 608 79 582 529 466 70 535 .23 -100 .408 36 9 6.241 7.086 .16 .141 .066 1544 137 336 349 188 201 -2.825
12 932 636 603 615 92 690 523 461 81 542 .312 0 -2.896 .399 43 13 6.554 7.442 .153 .134 .016 1544 137 335 348 228 241 -2.896
13 869 638 1617 959 430 587 529 466 379 845 1.914 0 -2.094 .44 41 16 3.76 4.27 .266 .234 1.963 1544 137 335 348 268 281 -2.094
14 943 642 231 608 76 647 532 469 67 535 .385 0 -1.787 .386 32 9 3.039 3.451 .329 .29 .167 1544 137 334 347 309 322 -1.787
15 2420 1143 2601 699 171 790 528 465 151 616 0 -100 .124 97 27 15.211 17.27 .066 .058 0 1544 137 333 346 349 362 -4.11
16 631 610 132 628 41 593 587 517 36 553 .032 0 -1.87 .635 16 2 3.22 3.655 .311 .274 .021 1544 137 332 345 390 403 -1.87
17 669 639 112 660 17 645 643 566 15 581 0 -2.903 .841 11 2 6.588 7.48 .152 .134 1544 137 331 344 430 443 -2.903
18 782 629 358 628 651 636 560 -7 553 .029 0 .7 10 0 .001 1544 137 330 343 470 483
19 709 693 277 620 16 615 604 532 14 546 .309 0 -4.297 .374 16 1 17.313 19.657 .058 .051 .026 1544 137 377 390 148 161 -4.297
20 794 682 78 611 13 666 598 527 11 538 0 -2.768 .58 9 0 6 6.812 .167 .147 1544 137 376 389 188 201 -2.768

Total number of rows: 1152

Table truncated, full table size 129 Kbytes.




Supplementary data files not provided
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