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Sample GSM1718 Query DataSets for GSM1718
Status Public on Jun 27, 2002
Title 5X vs 2X (sva046_sf)
Sample type genomic
 
Channel 1
Source name 2X
Organism Homo sapiens
Extracted molecule genomic DNA
 
Channel 2
Source name 5X
Organism Homo sapiens
Extracted molecule genomic DNA
 
 
Description Category: X Chromosome
Subcategory: aCGH cell line
Scanning Software: unknown
Software version: unknown
Lot batch = sva046_sf
 
Submission date May 23, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL179
Series (1)
GSE49 DNA copy-number changes

Data table header descriptions
ID_REF
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOP BOT LEFT RIGHT UNF_VALUE
1 928 3105 4402 3634 768 768 3634 4402 .945 0 .227 1.323 0 0 .854 .854 1.17 1.17 1.197 24 31 111 118 .227
2 952 4383 7744 6960 784 784 6960 7744 .957 0 .667 1.615 0 0 .63 .63 1.588 1.588 1.533 24 31 121 128 .667
3 952 179 1026 234 792 792 234 1026 .839 0 .387 1.429 0 0 .765 .765 1.307 1.307 .982 24 31 131 138 .387
4 944 56 890 114 776 776 114 890 .544 0 1.026 1.9 0 0 .491 .491 2.036 2.036 .653 24 31 141 148 1.026
5 928 372 1144 392 752 752 392 1144 .922 0 .076 1.025 0 0 .949 .949 1.054 1.054 .983 24 31 151 158 .076
6 928 213 1019 267 752 752 267 1019 .865 0 .326 1.122 0 0 .798 .798 1.254 1.254 1.163 24 31 161 168 .326
7 920 189 919 167 752 752 167 919 .887 0 -.179 1.083 0 0 1.132 1.132 .884 .884 1.227 24 31 171 178 -.179
8 920 68 830 62 768 768 62 830 .643 0 -.133 1.4 0 0 1.097 1.097 .912 .912 .733 24 31 181 188 -.133
9 944 115 950 174 776 776 174 950 .915 0 .597 1.809 0 0 .661 .661 1.513 1.513 1.577 24 31 191 198 .597
10 936 138 971 219 752 752 219 971 .893 0 .666 1.733 0 0 .63 .63 1.587 1.587 1.216 24 31 201 208 .666
11 912 103 948 220 728 728 220 948 .906 0 1.095 .952 0 0 .468 .468 2.136 2.136 2.136 24 31 211 218 1.095
12 896 231 1065 345 720 720 345 1065 .898 0 .579 2 0 0 .67 .67 1.494 1.494 1.745 24 31 221 228 .579
13 896 1341 4208 3488 720 720 3488 4208 .95 0 1.379 2.251 0 0 .384 .384 2.601 2.601 2.698 24 31 231 238 1.379
14 904 1376 2521 1809 712 712 1809 2521 .948 0 .395 1.399 0 0 .761 .761 1.315 1.315 1.25 24 31 241 248 .395
15 912 1944 5109 4389 720 720 4389 5109 .934 0 1.175 1.922 0 0 .443 .443 2.258 2.258 2.271 24 31 251 258 1.175
16 912 2250 4334 3614 720 720 3614 4334 .968 0 .684 1.555 0 0 .623 .623 1.606 1.606 1.65 24 31 261 268 .684
17 912 1226 3622 2894 728 728 2894 3622 .947 0 1.239 2.276 0 0 .424 .424 2.361 2.361 2.317 24 31 271 278 1.239
18 920 2127 3606 2862 744 744 2862 3606 .965 0 .428 1.379 0 0 .743 .743 1.346 1.346 1.399 24 31 281 288 .428
19 928 4900 9679 8943 736 736 8943 9679 0 0 .868 1.765 0 0 .548 .548 1.825 1.825 0 24 31 291 298 .868
20 912 4617 6645 5917 728 728 5917 6645 .946 0 .358 1.435 0 0 .78 .78 1.282 1.282 1.287 24 31 301 308 .358

Total number of rows: 6720

Table truncated, full table size 712 Kbytes.




Supplementary data files not provided

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