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Sample GSM1721 Query DataSets for GSM1721
Status Public on Jun 27, 2002
Title 2X vs 2X (sva101_sf)
Sample type genomic
 
Channel 1
Source name XX
Organism Homo sapiens
Extracted molecule genomic DNA
 
Channel 2
Source name XX
Organism Homo sapiens
Extracted molecule genomic DNA
 
 
Description Category: X Chromosome
Subcategory: aCGH cell line
Scanning Software: unknown
Software version: unknown
Lot batch = sva101_sf
 
Submission date May 23, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL179
Series (1)
GSE49 DNA copy-number changes

Data table header descriptions
ID_REF
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOP BOT LEFT RIGHT UNF_VALUE
1 1264 7511 12168 10789 1379 1379 10789 12168 0 0 .522 1.36 0 0 .696 .696 1.436 1.436 0 36 43 106 113 .522
2 1240 13495 22852 21497 1355 1355 21497 22852 0 0 .672 1.623 0 0 .628 .628 1.593 1.593 0 36 43 116 123 .672
3 1224 269 2477 1171 1306 1306 1171 2477 .613 0 2.122 1.899 0 0 .23 .23 4.353 4.353 5.797 36 43 126 133 2.122
4 1224 101 1389 100 1289 1289 100 1389 .971 0 -.014 1.338 0 0 1.01 1.01 .99 .99 1.227 36 43 136 143 -.014
5 1232 724 2248 934 1314 1314 934 2248 .946 0 .367 1.251 0 0 .775 .775 1.29 1.29 1.297 36 43 146 153 .367
6 1208 335 1914 608 1306 1306 608 1914 .946 0 .86 1.659 0 0 .551 .551 1.815 1.815 1.658 36 43 156 163 .86
7 1200 208 1460 163 1297 1297 163 1460 .967 0 -.352 .96 0 0 1.276 1.276 .784 .784 1.056 36 43 166 173 -.352
8 1184 134 1440 143 1297 1297 143 1440 .946 0 .094 .835 0 0 .937 .937 1.067 1.067 1.308 36 43 176 183 .094
9 1168 141 1395 106 1289 1289 106 1395 .974 0 -.412 .992 0 0 1.33 1.33 .752 .752 1.35 36 43 186 193 -.412
10 1176 209 1473 192 1281 1281 192 1473 .934 0 -.122 1.016 0 0 1.089 1.089 .919 .919 1.163 36 43 196 203 -.122
11 1184 396 1762 448 1314 1314 448 1762 .946 0 .178 1.081 0 0 .884 .884 1.131 1.131 1.091 36 43 206 213 .178
12 1192 410 1714 376 1338 1338 376 1714 .982 0 -.125 1.135 0 0 1.09 1.09 .917 .917 1.16 36 43 216 223 -.125
13 1208 2199 4336 2990 1346 1346 2990 4336 .973 0 .443 1.355 0 0 .735 .735 1.36 1.36 1.349 36 43 226 233 .443
14 1224 1538 3543 2188 1355 1355 2188 3543 .972 0 .509 1.426 0 0 .703 .703 1.423 1.423 1.383 36 43 236 243 .509
15 1232 2866 5322 3967 1355 1355 3967 5322 .957 0 .469 1.341 0 0 .722 .722 1.384 1.384 1.401 35 42 246 253 .469
16 1208 3504 6217 4862 1355 1355 4862 6217 .951 0 .473 1.552 0 0 .721 .721 1.388 1.388 1.397 35 42 256 263 .473
17 1200 2004 4135 2797 1338 1338 2797 4135 .971 0 .481 1.404 0 0 .716 .716 1.396 1.396 1.452 35 42 266 273 .481
18 1200 3740 6803 5457 1346 1346 5457 6803 .973 0 .545 1.454 0 0 .685 .685 1.459 1.459 1.506 35 42 276 283 .545
19 1200 12679 20637 19282 1355 1355 19282 20637 0 0 .605 1.532 0 0 .658 .658 1.521 1.521 0 35 42 286 293 .605
20 1192 6006 10251 8921 1330 1330 8921 10251 0 0 .571 1.428 0 0 .673 .673 1.485 1.485 0 35 42 296 303 .571

Total number of rows: 6720

Table truncated, full table size 747 Kbytes.




Supplementary data files not provided
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